Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-38 seq8 165 1e-35 >seq9 Length=827030 Score = 172 bits (190), Expect = 7e-38 Identities = 402/592 (68%), Gaps = 21/592 (4%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAG-CTT 6898 ||||| ||| |||| ||||| || || || | | |||| || || | ||| ||| Sbjct 501004 ATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCAAATTA-CAGACTT 500946 Query 6899 GAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCA 6958 | ||||| | || || || | | ||||||||| | |||||||||||| |||| || | Sbjct 500945 GTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTACTCCTAGCCCTA 500886 Query 6959 TATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGA 7017 ||| |||||||||||| ||| ||| ||||| | || | | ||||||| ||| Sbjct 500885 AATCACATGATCTTTGATA-CATAATACATGATAATTTCCCATCGAAAACATAAAACTGA 500827 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTC 7077 || || | |||||| |||||||| | || || | ||| | |||||| ||| | Sbjct 500826 CATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACATTCCATGCACAC 500767 Query 7078 ATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTG 7136 | | ||| | |||| | |||| ||||||||| || || || ||| |||||| Sbjct 500766 AAAAGAATTCTTCTACTTGTAGGATCA-TTTTTAATTAAATTTATTATATTTTTTAATTG 500708 Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAAAATGTC 7195 ||| | || | | |||||||||| || ||| |||| |||| | ||| || ||||||| Sbjct 500707 ATCCACTCCTTTATTTTCATAATTATCAT-ACATATTTGTATATTCAGCACCGAAATGTC 500649 Query 7196 TCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAA 7253 |||||||||| ||||||||||| |||||||| |||| | ||| || | | ||| Sbjct 500648 TCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTATGAAATAATTTTCTAT 500589 Query 7254 TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGA 7310 | || ||| | ||| | | |||| ||| ||||| || |||| || ||| | Sbjct 500588 T--ATCTAA---AAATTCCCTAGTACCATTAGCTTCCCATATCCTTACATTCTTATTTAA 500534 Query 7311 TAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACG 7370 || | | |||||| |||| ||| ||||| | | |||||| | ||||| | Sbjct 500533 CAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCTTCAATAATTCCTCT 500474 Query 7371 CCAAAACATTCTTTTTGTAGTGAATAAAGGGA---ATGTACTTAAATCATAT 7419 |||| | | | |||||||| ||||| |||| || |||||||||| || Sbjct 500473 TAAAAATAATTTCTTTGTAGTTAATAATGGGAAATATTGACTTAAATCAAAT 500422 >seq8 Length=883952 Score = 165 bits (182), Expect = 1e-35 Identities = 473/717 (66%), Gaps = 33/717 (5%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| || ||||||||| | || |||| | | ||||| |||||| || || Sbjct 87393 AATTTCAACTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTCAAGACCATCTTT 87334 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | |||||| ||| | ||| | | || |||||| ||||||| | |||| Sbjct 87333 AGAAGAACGTTTGCTAGTAGGATATATCCAAATTATATTATAAAACAATTAGG-TATAAA 87275 Query 164512 -CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCG 164570 ||| |||| || || ||||| |||| ||||||||| |||||||| ||||| ||| | Sbjct 87274 GCATGTAAAGGGTATGATATTATATGGTCCTCCTGGTACAGGTAAAACCTTAATAGCTAG 87215 Query 164571 ATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 | || | ||| || ||| || || ||| ||||| |||||||||| ||| | Sbjct 87214 ACAAATAGGG-AAGACATTGAATGCACGAGAACCG--AAAATAATTAATGGTCCAGAAAT 87158 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGA 164687 ||| || |||||||| || | ||||||| ||| || | || || ||| | || || || Sbjct 87157 ATTAAATAAATATGTTGGACAATCAGAAGAAAATATTCGTAATTTATTTAAAGAAGCAGA 87098 Query 164688 A---GAAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGAT 164742 | ||| | || ||| | || || | | | ||||||| | || | || ||| Sbjct 87097 AATGGAATATAAACAGAGTGGAG----AGA-ATTCATTATTACATATAATAATATTAGAT 87043 Query 164743 GAGATAGATGCTCTTTG----CAAA----AAACGT-GGTGATAATATTATTC------AT 164787 || || |||||| | || |||| ||| || ||| | || || | || Sbjct 87042 GAAATTGATGCTATATGTAGACAAAGAGGAAATGTAGGTTCAAGTAGTACTGGGGTAAAT 86983 Query 164788 GATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATT 164847 ||| || || ||||| || | |||||||| ||||| ||| | ||||||||||| Sbjct 86982 GATAGTGTCGTAAATCAATTATTATCTAAAATCGATGGAGTAAATAGTTTAAATAATATA 86923 Query 164848 TTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGT 164907 || | | || ||||| || || |||||||| ||||| ||||| | || ||||| Sbjct 86922 CTATTAATTGGAATGACAAATAGAATAGATTTAATAGATGAAGCTTTGCTTCGTCCTGGA 86863 Query 164908 CGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTA 164967 |||| || || | ||||||||| ||||| | |||||||| | | ||||| ||| Sbjct 86862 AGATTTGAGTTACATATAGAAATATCCTTACCAAATAAAGAAGGCAGAATACAAATATTA 86803 Query 164968 AAAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAAT 165027 || ||||| || |||| | || ||| |||| | |||||||| || || Sbjct 86802 AATATTCATACAAAAAATATGAGAATGAGTAATAAATTAAGTTCCGATGTAAATATATTA 86743 Query 165028 AAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 || |||| | |||| || | | ||| || ||| | || || ||||||||| Sbjct 86742 GAATTAGCCGAAAGAACTCCTAACTTTTCTGGAGCAGAAATTGAAGGTTTAGTAAGA 86686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866212593200