Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 141 8e-29 seq4 136 4e-27 >seq5 Length=2641308 Score = 141 bits (156), Expect = 8e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGT--TGGAATCCT 94856 |||||||| ||||||||||||||||| | |||||||| | ||| || | ||| | Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATC--TGATAAGGTCCTTCCATCTT 2485540 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | | |||||||| |||| ||||||||||| ||||| |||||||| |||||||| || | Sbjct 2485541 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 2485600 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||||||||| || | | || |||| | || || |||| || ||||||| Sbjct 2485601 GAATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTT 2485660 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||||| ||||| || ||||| Sbjct 2485661 TTCCAGTTAATGTTTTTACAAAAATTTGCAT 2485691 >seq4 Length=1968205 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| ||||| ||||| || |||||||||||||| | Sbjct 458843 AAAAATTTGCATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAAT 458784 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||||||| | ||| | ||| || | |||||||| |||| ||||||||||| Sbjct 458783 GTTATAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTG 458724 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| |||||||| || | |||||||||||| || | | ||||| Sbjct 458723 TTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTC 458664 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 || | |||||||||| || || |||||||| Sbjct 458663 AGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286845971720