Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6 228 9e-55 >seq6 Length=3179732 Score = 228 bits (252), Expect = 9e-55 Identities = 617/937 (66%), Gaps = 21/937 (2%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| || | || | | || || | ||| | | || || ||| | ||| | Sbjct 149842 ATTTAAAATTCCGTATTCAGACAAAAGACTTGATCCTTTCGTTGTGCCATGACTCCTGAT 149901 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 ||||||||||| |||||||| || ||||| ||||| ||||||| | ||| || | Sbjct 149902 TTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAAG 149961 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||| ||||||||||| || | || |||||| || || | | |||| Sbjct 149962 TCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCCTAAACATTCTAAT 150021 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| || |||||||||||||||||| |||| | | | ||||||| || || || Sbjct 150022 AATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATTAAA 150081 Query 21365 TTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 | ||| || | | || | ||||||| |||| | || ||||| || || Sbjct 150082 TC-ACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACGAT 150140 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAAT--AATTGTTTAAACATCAAACATGCA 21481 |||| || | | ||| || | | || || ||| || | || || || | Sbjct 150141 ATTTTGTACCATT--TGTTCTGGAAGTTTATTATCTAATAAACTATAAATTAAGCAATTA 150198 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 ||||| ||| || |||||||| ||||| |||||||||||| |||||| |||||| | Sbjct 150199 AAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACCGTGT 150258 Query 21542 A-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGC 21599 | || || | | || || |||||||| |||| | |||| || || || || || | Sbjct 150259 AATTTATTTTGT-TTCTTAAACCAAAAAATTG-CACAAAAACTACCACTGAATAATATTC 150316 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG---TAGATTCTTTATCCAATA 21656 | ||||| ||| ||||| | || |||| | | | ||| || ||| | Sbjct 150317 CTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTAGTATCATTA------A 150370 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 |||||||| |||||||| ||| || | ||| | | || | || ||||| | | Sbjct 150371 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 150430 Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 | | || | |||| | | |||| | || |||||| ||| Sbjct 150431 ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTT 150490 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 | ||||| |||||||||| ||||| ||||| ||||| | | || || | || Sbjct 150491 CTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTT 150550 Query 21837 GAACCTCGGAATAAAATCGTTG-AGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||||| ||||| | | |||||| ||||| |||||| |||||||| || ||| Sbjct 150551 GAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCA 150609 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCT 21955 |||||||| || | || |||||||||| | || || || | ||||| | ||||| Sbjct 150610 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCT 150669 Query 21956 AATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTA 22015 |||||| | |||||||| | |||||| | ||||||||| ||| ||| || || Sbjct 150670 TTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTG 150729 Query 22016 TACATAATCCAGATATCATTATATATTATTGGAAATA 22052 || | | ||| | |||| ||||| ||||||| ||| Sbjct 150730 TAAAAATCCCAAACATCAGGATATAATATTGGATATA 150766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895633913480