Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 262 1e-64 seq9 122 2e-22 >seq6 Length=3179732 Score = 262 bits (290), Expect = 1e-64 Identities = 615/918 (67%), Gaps = 20/918 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| ||| |||| | ||| || ||| ||||| ||| | | Sbjct 1471311 TATGATTATTTTGGATTTAAAACGTTGGAAAGATCTTATTTATTACGTATTAATAATAAA 1471252 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||| | || || ||| | |||||| | ||| |||||||||| ||| || Sbjct 1471251 ATTATTGAAAGACCTCAACATTTATTAATGAGAGTTTCTATTGGTATACATATAGATGAC 1471192 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 | ||| || | ||||||||| | | ||| ||| || | || || || Sbjct 1471191 ATAGATAAAGCTTTAGAAACATATCA---TTTAATGTCTCAGAAATATTTTACCCATGCA 1471135 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| ||| ||| | ||||| | | ||||| ||||||||||| |||||| | Sbjct 1471134 ACTCCTACATTGTTTAATTCAGGAACCCCAAGACCACAAATGTCTTCTTG-TTTCTTGTT 1471076 Query 363619 AA-AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | |||||| | ||||| || || ||||| ||||| || || || | |||||| | || Sbjct 1471075 ATCAATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACGCTAAAACAATGTGCTTTAAT 1471016 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTA 363737 | || | |||||| || ||||||||| | | || || | | | |||||| ||| Sbjct 1471015 TAGTAAAACTGCAGGAGGTATTGGTGTAGCAGTACAAGATATAAGAGGACAGAATTCTTA 1470956 Query 363738 CATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||| | || || | || ||| || ||||| | || || ||| | | || ||| | Sbjct 1470955 TATTAGAGGTACCAATGGAATA-TCTAATGGTTTAGTACCTATGTTAAGAGTTTTTAATG 1470897 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 ||||||| || || || || || ||||||||||| || || || |||||||| | ||| Sbjct 1470896 ATACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAGGGATCGTTTGCTGTTTATA 1470837 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | || || ||| | ||||| ||||| ||| | || | | || ||| ||||||| Sbjct 1470836 TTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGAAAGAACCATGGAAAAG 1470777 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 | ||||| | ||||| ||| | || ||||| | |||||| |||| | |||||||||| Sbjct 1470776 AAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGATCTTTTTATGAAGA 1470717 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || | | | ||| |||||| || | | || ||| | |||||||||||| | | Sbjct 1470716 GAGTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTG 1470657 Query 364037 ATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAA--- 364091 | |||||||| || | || | ||||| ||| |||||| || | ||| Sbjct 1470656 AAACTTGGGGTGAAGAATTTGAAAAATTATATACTAAA--TATGAA---GAAGAAAATAT 1470602 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 || || ||| ||| || || | |||||||||| || | | || || || Sbjct 1470601 GGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGA 1470542 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 |||||| ||| |||||| | || |||||||| || || || ||||| ||| | | Sbjct 1470541 AACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAATCAGAAAAA 1470482 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 | ||||| ||| | || ||| ||||| || ||||| ||||| ||| |||| || Sbjct 1470481 TTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACCTCTCCTGA 1470422 Query 364272 CGAGACTGCCGTATGTAA 364289 || ||| |||||||| Sbjct 1470421 TGAAGTTGCTGTATGTAA 1470404 >seq9 Length=827030 Score = 122 bits (134), Expect = 2e-22 Identities = 380/583 (65%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| ||| | | || |||||| | || || | |||||| | |||||| | || | Sbjct 500439 ATTTCCCATTATTAACTACAAAGAAATTATTTTTAAGAGGAATTATTGAAGAATTGCTTT 500498 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-AATGTAAAAATTTGG 111431 |||||||| | ||| ||||||| ||| | ||| | || ||||||| || ||| Sbjct 500499 GGTTTATTAGAGGAGAAACAAATGGTAAT-ACGTTGTTAAATAAGAATGTAAGGATATGG 500557 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTC-AGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||| | | || ||| ||||| || | | || | | |||| Sbjct 500558 GAAGCTAATGGTACTAGGGAATTTTTAGATAATAGAAAATTATTTC-ATAGAGAAGTTAA 500616 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||| | ||||| |||| || ||||||||| | || || ||||| || || | || || Sbjct 500617 CGATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAATAT 500676 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 | | || ||||| | ||| ||||||||| | ||| | || || |||||| Sbjct 500677 GTATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATTAA 500736 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | || || | | | ||| || || |||||||||| ||| | | || | Sbjct 500737 AAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCA 500796 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||| | || || |||||| || | || ||||||||||| ||| |||| | || Sbjct 500797 AATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATTATC 500856 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||| |||| |||| | || || || || || ||||||||||| Sbjct 500857 ATGTATTATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTC 500916 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | | ||||| | || || || | ||| | |||| | | ||||| Sbjct 500917 TTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCGCAGTTCAT 500976 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGAT 111893 |||||| | ||| |||| |||||||| | || ||||||||| Sbjct 500977 ACACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGAT 501019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340624707614