Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq4 120 3e-22 >seq5 Length=2641308 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 || ||||||||| | |||||||||||||||||||||||| | |||||| | || || || Sbjct 2485697 AAGAAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGA- 2485639 Query 24045 GCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 |||| | || || || ||| | || || ||| ||| || |||||||| || ||||| Sbjct 2485638 GCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCC 2485579 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 |||||||| ||| | || | | || || ||| | ||||||| || | | | || Sbjct 2485578 TGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGA 2485519 Query 24164 TTATAACATTCAAAAAGAATCTAC 24187 |||||| |||||||| |||||||| Sbjct 2485518 TTATAATATTCAAAAGGAATCTAC 2485495 >seq4 Length=1968205 Score = 120 bits (132), Expect = 3e-22 Identities = 151/202 (75%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCAAGTCAAACAAAA 24076 |||||| | || ||| | || |||||| ||| | |||||||| ||| | || || ||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAG-CCATCTGACACCATTGAGAATGTTAAGGCAAA 458689 Query 24077 GATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||| || |||||||| || || || || ||||| ||| | || | | || || || Sbjct 458690 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 24137 ACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATT 24195 | | ||||||| |||| | | | | ||||||||||||||||| ||||||||| | || | Sbjct 458750 ATTAGAAGATGGAAGAA-CTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACT 458808 Query 24196 TAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||| ||||| || Sbjct 458809 TAGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931928640435