Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5 129 5e-25 seq4 98.7 8e-16 >seq5 Length=2641308 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||||||||| ||||| | || ||||||||||||||| | || ||| || Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAG-CC 2485636 Query 115343 AGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | | || || ||| | || || ||||||| ||||||||||| | || ||| Sbjct 2485635 ATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGA 2485576 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| |||||| | || | ||| || |||||||||||||||| | ||| | | ||||| Sbjct 2485575 TCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTA 2485516 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| |||||||| || |||||| |||| |||| Sbjct 2485515 TAATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 115313 GGAAAAACCATTACCGTCGAAACGGAGTCCAGC-GACACTGTTGGACAAGTAAAACAAAA 115371 |||||||| || ||| | || ||| ||| | ||||| ||| | || || ||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAG-CCATCTGACACCATTGAGAATGTTAAGGCAAA 458689 Query 115372 AATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACA 115431 |||| ||||||||||| | || ||| || |||||| | || | ||| || ||||| Sbjct 458690 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 115432 ATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATAT 115491 ||||||||||| | ||| | | ||||||||||||||||| || ||||| |||| | Sbjct 458750 ATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTT 458809 Query 115492 GGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| |||| || Sbjct 458810 AGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425339972125240