Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 428 6e-115 >seq6 Length=3179732 Score = 428 bits (474), Expect = 6e-115 Identities = 1123/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| ||||||||||||||||| | ||||| ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGT---TTGTATTCTGAATGGA 62106 || | |||||| || ||||| |||| || ||||| | | || ||| ||||| Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAG-TCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 62107 TCCACCATCTGCCATAA--TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 |||| | || || | | || || | || || |||| |||||| ||| || | Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTT--TCATGTCTTCATCCCATAAACCTCTGTCAAAT 1469797 Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224 ||| || | | | ||| |||||||| || |||||||||| || ||||| | | Sbjct 1469798 AAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAA 1469857 Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 ||||||||||| ||||| ||||| | || ||||| ||||| | |||||| | ||| ||| Sbjct 1469858 TAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGAT 1469917 Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62344 ||||| ||||||||||| | ||||| ||||| | ||| | | | | ||||||| || Sbjct 1469918 GCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCT 1469977 Query 62345 TTTAGAGGTTCCCAATTCCAAAGAT-----CCGACGGTACAACNNNNNNNNNNNNNNNTT 62399 |||| ||||||| |||| | | || | | | || Sbjct 1469978 TTTAATTCATCCCAATCCCAATATTTGTTATCAAC--TTTAGCATTCCACATATCAAATT 1470035 Query 62400 GTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62458 ||| ||||| | || || | || |||| ||| | || |||||||| | | | Sbjct 1470036 GTAATATACCTTGGCTTGCTGGAC-TTCCTTGATAAGATTCATATGGTCCATGTATTGAA 1470094 Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 || | |||| | | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1470095 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 62519 AGATCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 62576 | |||| || | ||| ||| ||||||| |||| | ||||| | ||||||| Sbjct 1470155 AATTCTTTTGCAGCATCAG--ATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1470212 Query 62577 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 62636 ||||||||||||||||||| ||||| |||||||| ||||||| ||| |||||| | Sbjct 1470213 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1470272 Query 62637 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 62696 ||||||||||| | ||||||||||||| | |||||| ||| | |||| | | Sbjct 1470273 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTT 1470332 Query 62697 CCT-TCAGTTTGAGAAAATCAAATCGCCCATCT----AT-TACAAACATGTTCAATGCAA 62750 | | | | ||| ||| | || || | | || |||||| | || || | Sbjct 1470333 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTA 1470392 Query 62751 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62810 |||||||| |||||| || || || |||| || | | ||||| || || ||| | Sbjct 1470393 TAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAAC 1470452 Query 62811 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 62870 | | |||||||| || || || || ||||||| ||||| ||| ||||| | || Sbjct 1470453 ATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAAT 1470512 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 | ||||| || || |||| || ||||| || || || || || || ||| | Sbjct 1470513 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1470572 Query 62931 CGACTCGAGCCTTTATTATAGATTTGTATC---TCTTTTCTCTTTCGTATAGTGTATACA 62987 || |||| | | | ||| | || | |||||| ||| ||| ||||| | Sbjct 1470573 AATCTTGAGC---AAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATA 1470629 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || ||| || || || |||||| | | || |||||||||| |||||||| | Sbjct 1470630 ATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | | ||| | | | || || |||| |||||||| |||||||||| ||| | ||| Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 ||||| ||||| | ||| ||| || ||||| |||||| | | ||| | || Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATT 1470809 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | ||||| |||||||| ||||| | || | || | ||| ||||| || Sbjct 1470810 CAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTC 1470869 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||||| Sbjct 1470870 CACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCAT 1470929 Query 63288 TGGATGTACCATTGGTCCCTGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGAT 63346 | ||| | |||||||| ||| |||| || | | | | | |||| | || | Sbjct 1470930 TAGATATTCCATTGGTACCTCTAATATAAGAATTCTGT-CCTCTTATATCTTGTACTGCT 1470988 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| ||||| ||||| || ||| |||||| ||| ||| | || Sbjct 1470989 ACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATA 1471048 Query 63407 CCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 || || ||| ||| | ||| || ||| || ||||| ||||||||| | | Sbjct 1471049 CCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGTGGTCTTGG 1471107 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||||| | |||||| || ||||||| || || ||||| |||| | ||| | || || Sbjct 1471108 GGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATG 1471167 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || | |||| ||||| || | ||| || || | | || | |||||| Sbjct 1471168 ATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAA 1471227 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 | || ||||||||||||| || || || || || || || || ||| ||||||| Sbjct 1471228 TAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAA 1471287 Query 63646 AGTTTTAAAACCAAAATA 63663 |||||||| |||||||| Sbjct 1471288 CGTTTTAAATCCAAAATA 1471305 Score = 178 bits (196), Expect = 2e-39 Identities = 590/906 (65%), Gaps = 20/906 (2%) Strand=Plus/Plus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 ||| | ||| ||||| |||||| || || | || | ||| || ||||| || ||||| Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 |||| | ||| || ||||| ||| |||||||| | || ||||||| Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002 Query 32471 AAATCCCAA---TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 32527 |||| || ||| ||| |||||||| || ||||||||||||||| ||| | Sbjct 150003 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059 Query 32528 TTCACAATTCATTCCTATAAGTTTAACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCA 32585 | | ||||||||||||| | | | ||| | || |||| | || |||| ||| Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTT--TCA 150117 Query 32586 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AAT 32642 | || || ||| | | ||| | ||| ||| ||| || || ||| Sbjct 150118 ACTTCTACAGCTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAAT 150177 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 ||| || | || || || ||||| |||| || || |||||||| |||||| Sbjct 150178 AAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAAT 150234 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || ||| || | ||| | | | | || |||| |||||| || | | || Sbjct 150235 TCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTG-CACA 150293 Query 32763 AATGAT-CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 || | ||| || || |||||||| || ||| |||| || ||| || || | Sbjct 150294 AAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAA 150353 Query 32822 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 | |||| ||||| ||| ||||| || || |||||||| ||| || Sbjct 150354 CGAATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGAT 150413 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 32941 | |||||||||| ||| | || | |||| || |||||||| ||| ||||||| Sbjct 150414 ATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAAT 150473 Query 32942 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 || | |||||| |||| |||||||| ||||| | || |||||||| || || Sbjct 150474 TAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTT 150533 Query 33002 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTA 33060 | |||| || || || || || ||| | |||| | | || || |||||||| |||| Sbjct 150534 TTTAGCTTCCGTTATTTGAACCTCTCTTAAAAA-CTTACTAGCCAAATTTTCTAATACTA 150592 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | || ||||| ||||||||||| || || ||||| |||||||||| ||| || | | Sbjct 150593 TACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCAT 150652 Query 33121 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 | | ||| | |||| || | ||| |||||| ||| | |||||| |||||||||| | Sbjct 150653 TCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAG 150712 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 33240 | || || || || || || | || ||| | ||| ||||| |||||| | | | || Sbjct 150713 AAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGTAA 150772 Query 33241 ATCTAT 33246 ||| || Sbjct 150773 ATCGAT 150778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625845849200