Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 seq4 122 8e-23 >seq5 Length=2641308 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || || || ||| |||| || | || || ||| | || Sbjct 2485692 AATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATC 2485633 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || ||| | ||| |||||| ||| || |||||||| ||||| ||||| | Sbjct 2485632 TGATACGATTGAGAATGTTAAGGCAAAAATTCAA-GATAAAGAAGGAATTCCTCCTGATC 2485574 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || |||||||||||||||| | || | ||||| | Sbjct 2485573 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2485514 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||| ||||| || |||| || || Sbjct 2485513 ATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAA 25084 || ||| | || || | || || ||| | |||||||| || ||| | ||| ||||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 458690 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 | ||| || |||||||| ||||||||||||||||| | | || ||||| || ||||| Sbjct 458691 ATTCAA-GATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 ||||||||||| | ||| | ||||| || |||||||| ||||| || |||| || Sbjct 458750 ATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTT 458809 Query 25205 AGTGCTAAGGCTAAGAGGAGG 25225 |||| |||| ||||||| || Sbjct 458810 AGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323896519255