Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-25 seq4 102 7e-17 seq6 86.0 5e-12 >seq5 Length=2641308 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| ||||| ||||| || ||||| | || ||||| || || | Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || |||||||||||| || || || ||||| || ||| Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2485575 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | |||||||| || ||||| ||||| ||| | ||| | || ||||| Sbjct 2485574 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2485515 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| ||||| || |||| || || Sbjct 2485514 AATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| | || ||||| || || | | || ||| | || || | || |||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 458690 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || || |||||||| || |||||| | | |||||||| || ||||| Sbjct 458691 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACAA 458750 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| ||| | || | || ||||| ||||||||||| ||||| || |||| ||| Sbjct 458751 TTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTTA 458810 Query 22426 GTTTTGCGATT 22436 || || |||| Sbjct 458811 GTGTTAAGATT 458821 >seq6 Length=3179732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 234/354 (66%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 129504 AAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTT 129563 |||||| || || || ||||||| ||| | ||| || || | |||| | |||| ||| | Sbjct 1470199 AAATGTATCTGCTAATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGT 1470258 Query 129564 TTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAA-TTCTTGACCA 129622 || ||| | ||||| || || | ||||||||||| | |||| |||||| | Sbjct 1470259 TTTTGCTTCTTTGACTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTG-TAA 1470317 Query 129623 CAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAA 129682 |||||| || | | | |||| ||| ||||||| | || | || | || |||| Sbjct 1470318 TAATTTTGGTAATTTCATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAA 1470377 Query 129683 ATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACT 129742 ||| | | | || || |||||||| || || ||| ||| | | || | Sbjct 1470378 ATTTACATAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATT 1470437 Query 129743 CGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACT 129800 ||| |||||| || || |||||| |||||| || ||||||| || ||||| | | Sbjct 1470438 CGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATT 1470497 Query 129801 TTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || || || |||| |||||| || | ||| || || || ||||| | ||| Sbjct 1470498 TTGCA--TTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTG 1470549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724025307005