Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-31 seq4 149 1e-30 >seq5 Length=2641308 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||||| || || || ||||| || |||||||| || | ||||| |||||||| Sbjct 2485482 TACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTC 2485541 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| || || || || ||||| | ||||||||| || || ||||| ||||| || ||||| Sbjct 2485542 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 2485601 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||||||| || ||| || || || | || || || || | ||| |||||||| Sbjct 2485602 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2485661 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 2485662 TCCAGTTAATGTTTTTACAAAAATTTGCATT 2485692 >seq4 Length=1968205 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| || || || ||||| ||||||||||| || | || || |||||| Sbjct 458815 AACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGATAAAGTTCTTCCATCT 458756 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || ||||| | |||||||||||| |||||||| ||||| || ||| Sbjct 458755 TCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 458696 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| |||||||| || ||| |||||||| | || || || || | ||| || ||| Sbjct 458695 TGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTT 458636 Query 68430 TTTCC 68434 ||||| Sbjct 458635 TTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613448742440