Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq4 86.0 4e-12 >seq5 Length=2641308 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| | ||||||||||| || |||||||||||| | || || | Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || ||| | | || ||||| ||||||| |||||||| || | ||| | Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2485575 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| || || | | ||||| Sbjct 2485574 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2485515 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 |||||||| |||||||||||| | || ||||| Sbjct 2485514 AATATTCAAAAGGAATCTACTTTACACTTGGTA 2485482 >seq4 Length=1968205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 21907 ATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAACCAACAGAGACTTA 21963 || ||||| ||||||| |||||||| || | ||||| ||||||| ||| | | Sbjct 458677 ATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCACCTG---ACCAACAAAGATTAA 458733 Query 21964 TCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGG 22023 | ||||| || |||||| |||||||| || |||| | | ||||| || ||||| |||| Sbjct 458734 TATTTGCAGGAAAACAATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGG 458793 Query 22024 AATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| | || | || ||| | ||| |||| || Sbjct 458794 AATCTACATTACACTTAGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358121408670058