Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq5 86.0 5e-12 >seq4 Length=1968205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| || ||||| |||| |||||||| ||||||||||| ||||| Sbjct 458833 ATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCT 458774 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| | |||||| || || | || | | |||||||| || Sbjct 458773 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGT 458714 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||||| ||| | | |||| |||||| | | || Sbjct 458713 GGAATTCCTTCTTTATCTTGAAT-TTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTC 458655 Query 114332 GACGTCCACGGTCACCGTTTTGCC 114355 |||||| | ||| | ||||| || Sbjct 458654 GACGTCAAGGGTTATAGTTTTTCC 458631 >seq5 Length=2641308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA--GTACGAGAATCTT 114231 || || |||| |||||||| |||||||| || ||||| | ||| || | ||||| Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATC--TGATAAGGTCCTTCCATCTT 2485540 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 | | |||||| ||||| | || | | ||||| || |||||||| |||||||| || Sbjct 2485541 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 2485600 Query 114292 CAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTT 114350 ||| ||||| ||| | | |||| || || | | || || || | ||| | ||| Sbjct 2485601 GAAT-TTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTT 2485659 Query 114351 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | |||||||||||||| ||||| Sbjct 2485660 TTTCCAGTTAATGTTTTTACAAAAATTTGCAT 2485691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130421458524