Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-13 seq5 89.7 1e-12 >seq13 Length=1076939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 239/357 (67%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 || || || | ||||||||| ||| | ||| | |||||||| || |||||||| Sbjct 508441 TCTGAATTATTTGGAAAAGTTCAATGTTCTATTCAAAATGAAAATACACCATTTTATCCA 508500 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAG 72548 | |||||| | | ||||| || || || ||| || | |||||| | || Sbjct 508501 GTATCCCCTTATGCCATAGCAAAATTATATGCACATTATATTACAATAAATTATAGAGAA 508560 Query 72549 TCGTATAACATGTAT-GTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGG 72607 || || || |||| | |||| || |||| || ||||| || ||||| | ||||| Sbjct 508561 TCATACAATATGTTTTGTATT-AATGGTATTTTATTTAATCATGAAAGTCCAAGAAGAGG 508619 Query 72608 CCATCAGTTCGTGACTCGTAAAATCACGA-AGGTGGTCGCGAATATTTTCAATGGTGTCG 72666 | ||| || || | ||||| || | |||| | || || ||| || | | Sbjct 508620 AGAAACGTTTGTTACAAGAAAAATTACTAGAGGTATT-GCAAAAATTCAAAAAAAATTAG 508678 Query 72667 AAAAATGCATGTATCTC-GGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGAT 72725 ||| || ||| ||||| |||||||||||| | | |||||||||||| |||| |||||| Sbjct 508679 AAACATCCAT-TATCTTAGGTAATATAGATACATATAGAGATTGGGGACATGCTAAGGAT 508737 Query 72726 TACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATT 72782 || ||| | || |||| | ||| |||||||| || | ||||| | ||| ||| Sbjct 508738 TATGTATATGCTATGTATCTTATGTTGCAACAAAATGAGGCAGATGATTTTGTTATT 508794 >seq5 Length=2641308 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | | || | ||| ||||||||||||||||| || || Sbjct 2485500 TTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCAGCAAA 2485559 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| || ||||| || || || || Sbjct 2485560 TATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATT 2485619 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | || || || || || || || || || || | || || || Sbjct 2485620 CTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTTTTTAC 2485679 Query 288462 GAATATCTGCATTATGTTA 288480 || || |||||| | ||| Sbjct 2485680 AAAAATTTGCATTTTCTTA 2485698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642656171806