Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq6 87.8 2e-12 >seq5 Length=2641308 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| || ||||||| | ||| | | ||||| | || || || Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2485554 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | || || || ||||||||||||||||| ||||| |||||| ||| Sbjct 2485555 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2485614 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| | || || || | || | ||| || || || || ||| Sbjct 2485615 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2485674 Query 64427 TTTACGAAAATTTGCATTTT 64446 ||||| |||||||||||||| Sbjct 2485675 TTTACAAAAATTTGCATTTT 2485694 >seq6 Length=3179732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 320/494 (65%), Gaps = 13/494 (3%) Strand=Plus/Plus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| ||||| || || || |||| ||| |||| | | |||| | |||||| || Sbjct 1470394 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1470453 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || ||||| ||| ||| || |||| ||||||||||| ||||| || || | || Sbjct 1470454 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATC 1470513 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765 ||| || | || || || || ||||| | |||| ||| |||| || || || Sbjct 1470514 TTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTG--TAATATAGCAAACCAT 1470571 Query 154766 ACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 | || | || |||| | |||||| ||||||| || | | Sbjct 1470572 AAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1470631 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGAC--AAACCGGGACAGCGGTCGGGACACATCA 154881 |||||||| ||| || || || || ||||| ||||| | |||||||| | Sbjct 1470632 TTTTCAAATTCTTCACCC--CAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689 Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941 ||| ||| ||| |||| || || | |||||||| | ||| || ||||| | ||| | Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749 Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCT-TTAAATTCAAAAAA 155000 | || ||||| || || || ||||| || ||| ||| | |||||| ||||| Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCC-ATGGTTCTTTCTTAAATCTAAAAAT 1470808 Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCT 155060 ||| |||| || | ||||| || || | ||| || || | || || || ||||||||| Sbjct 1470809 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCT 1470868 Query 155061 ---CCTTGATCCAC 155071 |||||||| || Sbjct 1470869 CCACCTTGATCTAC 1470882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639947199880