Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08]
777 sequences; 20,501,737 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 5e-19
seq6 87.8 2e-12
>seq5
Length=2641308
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| |||||||| || ||||||| | ||| | | ||||| | || || ||
Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2485554
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | | || || || ||||||||||||||||| ||||| |||||| |||
Sbjct 2485555 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2485614
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | |||||| | || || || | || | ||| || || || || |||
Sbjct 2485615 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2485674
Query 64427 TTTACGAAAATTTGCATTTT 64446
||||| ||||||||||||||
Sbjct 2485675 TTTACAAAAATTTGCATTTT 2485694
>seq6
Length=3179732
Score = 87.8 bits (96), Expect = 2e-12
Identities = 320/494 (65%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645
||| ||||| || || || |||| ||| |||| | | |||| | |||||| ||
Sbjct 1470394 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1470453
Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705
|| ||||| ||| ||| || |||| ||||||||||| ||||| || || | ||
Sbjct 1470454 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATC 1470513
Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765
||| || | || || || || ||||| | |||| ||| |||| || || ||
Sbjct 1470514 TTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTG--TAATATAGCAAACCAT 1470571
Query 154766 ACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823
| || | || |||| | |||||| ||||||| || | |
Sbjct 1470572 AAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAAT 1470631
Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGAC--AAACCGGGACAGCGGTCGGGACACATCA 154881
|||||||| ||| || || || || ||||| ||||| | |||||||| |
Sbjct 1470632 TTTTCAAATTCTTCACCC--CAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTA 1470689
Query 154882 ATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGT 154941
||| ||| ||| |||| || || | |||||||| | ||| || ||||| | ||| |
Sbjct 1470690 ATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCAT 1470749
Query 154942 ACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCT-TTAAATTCAAAAAA 155000
| || ||||| || || || ||||| || ||| ||| | |||||| |||||
Sbjct 1470750 AAAATAAATCTCGTGCTCTTAATTCTTCTTTTCC-ATGGTTCTTTCTTAAATCTAAAAAT 1470808
Query 155001 TCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCT 155060
||| |||| || | ||||| || || | ||| || || | || || || |||||||||
Sbjct 1470809 TCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCT 1470868
Query 155061 ---CCTTGATCCAC 155071
|||||||| ||
Sbjct 1470869 CCACCTTGATCTAC 1470882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499639947199880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |