Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5 102 6e-17 seq4 100 2e-16 >seq5 Length=2641308 Score = 102 bits (112), Expect = 6e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTTCTAATTGTTTGC 15037 ||||| || ||||| || || ||||| ||| || | || | |||||||||||||| | Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATC--TGATAAGGTCCTTCCATCTTCTAATTGTTTTC 2485552 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| |||| || | ||||| || ||||||||||| || || |||||| | Sbjct 2485553 CAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCT 2485612 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | ||| | || || ||||| || || || | |||||||||||| || || | | Sbjct 2485613 TAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATG 2485672 Query 15158 TTTTTACAAAAATTTGCATATT 15179 ||||||||||||||||||| || Sbjct 2485673 TTTTTACAAAAATTTGCATTTT 2485694 >seq4 Length=1968205 Score = 100 bits (110), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||||| ||||| || | ||||| || ||||| ||||| ||||| || Sbjct 458830 CCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATC--TG 458773 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | |||||||||||||| || || |||| || | |||||||| || Sbjct 458772 ATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTG 458713 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| || || |||||| || ||| | || || || || || | Sbjct 458712 GAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGA 458653 Query 15128 CGTCTAAGGTAATGGTTTTACCT 15150 |||| | ||| || ||||| ||| Sbjct 458652 CGTCAAGGGTTATAGTTTTTCCT 458630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388615609445