Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 seq4 114 1e-20 seq6 91.5 1e-13 >seq5 Length=2641308 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||||||||| ||||||||||| | ||| | ||| || ||||||||||| Sbjct 2485495 GTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCCA 2485554 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| |||| ||| || || || ||||| ||||||||||||||||||||| || Sbjct 2485555 GCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 2485614 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | || || || | ||| || || || |||| ||||| || |||| ||| Sbjct 2485615 ACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGTTAATGTT 2485674 Query 45324 TTTACAAAAATTTGCAT 45340 ||||||||||||||||| Sbjct 2485675 TTTACAAAAATTTGCAT 2485691 >seq4 Length=1968205 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || ||||||| || | || ||||||||||| || |||||||| | ||| | | Sbjct 458818 CTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGATAAAGTTCTTCCA 458759 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||||||||| |||| |||| ||| ||||| || ||||| ||||||||| Sbjct 458758 TCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTA 458699 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| || | || | |||||| || | |||||| || || || | Sbjct 458698 TCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATA 458639 Query 45306 GTTTTGCC 45313 ||||| || Sbjct 458638 GTTTTTCC 458631 >seq6 Length=3179732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| ||| || || ||||| || ||||| | || || ||| ||||| Sbjct 1470549 CAAATAGAAACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAAT 1470490 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 |||| || ||||| || || ||||||||||| | || | |||||||||||||| | | Sbjct 1470489 CAGAAAAATTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACC 1470430 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | ||| |||| || || ||||||||||| || || Sbjct 1470429 TCTCCTGATGAAGTTGCTGTATGTAATTTGGCATCTAT 1470392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998809918920