Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 >seq6 Length=3179732 Score = 140 bits (154), Expect = 4e-28 Identities = 710/1124 (63%), Gaps = 11/1124 (1%) Strand=Plus/Minus Query 111710 CCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTT 111769 ||| ||||| || || | || || | || || |||||||| |||||||| |||||| Sbjct 1471141 CCATGCAACTCCTACATTGTTTAATTCAGGAACCCCAAGACCACAAATGTCTTCTTGTTT 1471082 Query 111770 CCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGC 111829 | | | ||| || | ||||| || | || |||| | || || | ||||||| Sbjct 1471081 CTTGTTATCAATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACGCTAAAACAATGTGC 1471022 Query 111830 CCAAATC--TCAAAGTGGGCTGGTGGTATCGGGAT-GCACATCCATGATGTCAGAGCCAA 111886 ||| | ||| || | || ||||| || | ||| | || ||| | |||| | Sbjct 1471021 TTTAATTAGTAAAACTG--CAGGAGGTATTGGTGTAGCAG-TACAAGATATAAGAGGACA 1470965 Query 111887 CAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGT 111946 || ||| |||||||||||| ||||| ||| ||||| | | || ||| | | || Sbjct 1470964 GAATTCTTATATTAGAGGTACCAATGGAATATCTAATGGTTTAGTACCTATGTTAAGAGT 1470905 Query 111947 ATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGC 112003 ||||| | || || | |||||| | |||| ||| | || |||||||| | || Sbjct 1470904 TTTTAATGATACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAGGGATCGTTTGC 1470845 Query 112004 AGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA 112063 || ||| |||| |||||||| | ||||| | || || | || || | ||||| Sbjct 1470844 TGTTTATATTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGAAAGAACCA 1470785 Query 112064 AGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 || | || || | || ||| | || | ||| | ||| |||| ||||| || Sbjct 1470784 TGGAAAAGAAGAATTAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGATCTTTT 1470725 Query 112124 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGG 112183 |||||||||||| | || | | |||||| | | | |||||| | | || || Sbjct 1470724 TATGAAGAGAGTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGG 1470665 Query 112184 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAG 112243 | | || | |||||| || |||||| | || || || || || ||||||| Sbjct 1470664 TTTAAGTGAAACTTGGGGTGAAGAATTTGAAAAATTATATACTAAATATGAAGAAGAAAA 1470605 Query 112244 TCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAA 112302 | || | || || | ||| ||| | ||| ||||| | ||| | |||| Sbjct 1470604 TATGGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAGC-CAAA 1470546 Query 112303 CCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAA 112362 || || || |||||||||||| || ||||| | ||||| ||| ||||| | Sbjct 1470545 TAGAAACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAATCAGA 1470486 Query 112363 AGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACA 112422 | ||||||||| || || || ||| | ||| ||||| | |||| ||| Sbjct 1470485 AAAATTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACCTCTC 1470426 Query 112423 AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG 112482 ||||| ||||| ||||| | ||||| || ||| | || | ||| ||| | Sbjct 1470425 CTGATGAAGTTGCTGTATGTAATTTGGCATCTATAGCTTTATGTAAATTTGTAGATTTGG 1470366 Query 112483 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACC 112542 | | ||| ||| ||| | |||| | | ||| |||| |||| | | |||| ||| Sbjct 1470365 AAAAAAAAGAATTCAATTTTAAAAAGTTATATGAAATTACCAAAATTATTACAAGAAATT 1470306 Query 112543 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 || | | | |||| || ||||||| ||| || || | || | |||||||| | Sbjct 1470305 TAGATAAAATTATAGAAAGAAATTATTATCCAGTCAAAGAAGCAAAAACATCTAATACTA 1470246 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 |||| | || |||||| | ||||| ||||| | || ||| ||| || | | | Sbjct 1470245 GACATAGGCCTATTGGTATTGGTGTTCAAGGATTAGCAGATACATTTATGTTATTAAGAT 1470186 Query 112663 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATC 112722 | ||| ||| || || | || || ||| | ||| | |||||||| || |||||| Sbjct 1470185 ATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAAAGAATATTTGAAACTATGTATT 1470126 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 | || ||| | || | | || ||||| | |||| ||||||||| | | | Sbjct 1470125 ATGCTGCTTTAGAAATGTCTGTTGAATTGGCTTCAATACATGGACCATATGAATCTTATC 1470066 Query 112783 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG 112826 | || |||||| ||||| | | ||||||||||||||| Sbjct 1470065 AAGGAAGTCCAGCAAGCCAAGGTATATTACAATTTGATATGTGG 1470022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736371039440