Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 136 5e-27 >seq6 Length=3179732 Score = 136 bits (150), Expect = 5e-27 Identities = 467/715 (65%), Gaps = 11/715 (2%) Strand=Plus/Plus Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 ||| ||||| | |||||| ||| ||||| || ||||| |||||| || ||||| Sbjct 1470430 GGTATATTCGATAATTTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTG 1470489 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 ||| ||||| | || || | ||| ||||| ||||| ||||| || ||||| | || Sbjct 1470490 ATTGGATTTTGCATTACAAGAATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTG 1470549 Query 110448 TGACTTGAGA-ATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506 | ||| | || || ||||| ||| || | || ||| || | | | || Sbjct 1470550 -GCTTTGTAATATAGCAAACCATAAATCTTGAGCAAGAACTGTTTTTTTTCCCATATTTT 1470608 Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566 | || || || || || || || | |||||||| | || | ||| | ||| | Sbjct 1470609 CTTCTTCATATTTAGTATATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACC-T 1470667 Query 110567 TCGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 | || | ||||| | | | ||||||| | || | ||| |||||||| || Sbjct 1470668 GGACATTCATTTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAA 1470727 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || ||||||| ||| | || | || | || || | ||||| | || ||| Sbjct 1470728 AGATCAGGAACCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGG 1470787 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || | || || ||||| || | ||||| || ||||||||||| | ||| ||||| Sbjct 1470788 TTCTTTCTTAAATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCA 1470847 Query 110746 ATGGATCCCTTACGACGACC--CGCCTGGTTA-ACATAGCGTGCTGTGGCATTGAAGACC 110802 | ||||||||||| || | ||| | | ||||| | ||| || |||| || || Sbjct 1470848 AACGATCCCTTACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACT 1470907 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTG 110862 || | |||||| | | |||| ||| ||||| ||||| ||||| || || | Sbjct 1470908 CTTAACATAGGTACTAAACCATTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGT 1470967 Query 110863 GCACGAATGTCGTGGATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 | | || || || | ||| | ||||||||| || || ||||||||| ||||| Sbjct 1470968 CCTCTTATATCTTGTAC-TGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACA 1471026 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATTAGAAAGC 110980 | | | || || || ||||||| ||||| |||||||| || ||| || ||||| | Sbjct 1471027 TTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAA-C 1471085 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 |||||||||| || || | || ||||| | ||| || | |||||| || ||||| Sbjct 1471086 AAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATG 1471140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970279570600