Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 >seq6 Length=3179732 Score = 102 bits (112), Expect = 1e-16 Identities = 438/687 (64%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 |||||| ||| || || | || || ||||||||| ||||||| || || | ||||| Sbjct 1469848 TCTTCTATAATAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTG 1469907 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTT 106044 || || || || |||||||| ||||| | || | ||| | | ||| | || Sbjct 1469908 TGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACG 1469967 Query 106045 GATGCGTTCCTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACAT 106101 ||| | || | ||||||| || || ||| | || | | | |||||| Sbjct 1469968 GATTTTAGCTTTTAATTCATCCCAATCCCAATATTTGTTATCAACTTTAGCATTCCACAT 1470027 Query 106102 ATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTG 106161 ||||||||| | | |||||| | ||| || | | | | ||||| | || || Sbjct 1470028 ATCAAATTGTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATG 1470087 Query 106162 GGCTTCAGCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATAC 106220 | |||||||||| ||| | || | | || | |||||| |||||||| || | Sbjct 1470088 TATTGAAGCCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTC 1470146 Query 106221 GAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACAT 106280 ||||| || || || |||| || ||| ||| || | | || |||||| || Sbjct 1470147 TTTTATTCAATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTAT 1470206 Query 106281 CCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG 106340 | || | ||||||||||| | ||||||||| || |||| ||||||| || || Sbjct 1470207 CTGCTAATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTT 1470266 Query 106341 TCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 106400 | || |||||| ||||||| || || | | | || |||| | |||| ||| || | Sbjct 1470267 CTTTGACTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGG 1470326 Query 106401 TGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC--ATTGACATACTTTGG 106458 | ||||||| | |||| | ||| || | | | | | | || ||| | || Sbjct 1470327 TAATTTCATATAACTTTTTAAAATTGAA--TTCTTTTTTTTCCAAATCTACAAATTTACA 1470384 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 | || || ||||||||||| || ||||| ||||| | || || || | ||| Sbjct 1470385 TAAAGCTATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAAT 1470444 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 ||| ||| ||||| || ||||| || |||||||| || || || ||| || Sbjct 1470445 TTCACAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATT 1470504 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGG 106605 || | ||| || || ||||| || || Sbjct 1470505 ACAAGAATCTTTATATAGCATATATGG 1470531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975069811480