Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq4 138 3e-27 >seq5 Length=2641308 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || ||||||||||| ||||| | | || || |||||||| | || Sbjct 2485488 GTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTG 2485547 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || | || |||||| || |||||||| |||||||| ||||||||||| Sbjct 2485548 TTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 2485607 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || |||||||| || || || || || |||||||||| || ||||| || Sbjct 2485608 TGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGT 2485667 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 || |||||||| || | |||||||| Sbjct 2485668 TAATGTTTTTACAAAAATTTGCATTT 2485693 >seq4 Length=1968205 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||| | || || || |||||||| || ||||| | | ||| Sbjct 458825 TCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGATAAAGT 458766 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || ||||| || || | || ||||||||| || ||||| || Sbjct 458765 TCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGGAATTCC 458706 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||||||||||| ||| || |||||||||||||| || || || ||||| Sbjct 458705 TTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGACGTCAAG 458646 Query 195099 GGTAACCGTCTTTCCT 195114 ||| | || |||||| Sbjct 458645 GGTTATAGTTTTTCCT 458630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109470554763959