Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 592 2e-164 >seq6 Length=3179732 Score = 592 bits (656), Expect = 2e-164 Identities = 1156/1701 (68%), Gaps = 42/1701 (2%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || ||| || || || |||||||| | |||| | |||| || || Sbjct 1469620 CTGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTC 1469679 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGA 47239 |||||| ||||| || | | ||| | ||| ||||| | | | | || ||||||| Sbjct 1469680 CCATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACT 1469739 Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299 ||| || |||| | || | ||| | || | ||| | || ||| ||| Sbjct 1469740 TCCATTGTGAGCTATTAATTGCTGTTTCATGTCTTCATCCCATAAACCTCTGTCAAATAA 1469799 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 |||||| | ||| |||||||||| |||||||||| || ||||| | ||| Sbjct 1469800 ATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATA 1469859 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 |||||||| ||||||||||| | |||||||| ||||| | |||||| | ||| ||||| Sbjct 1469860 AATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGC 1469919 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 || ||||| | ||| | |||||| ||||||| |||| ||| | || | Sbjct 1469920 AGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTT 1469979 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGG-AAC---AACATTCCAAAAATCATATTGAA 47535 | |||||||||| || || | ||| | ||||||| | |||| |||| | Sbjct 1469980 TAATTCATCCCAATCCCAAT-ATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTA 1470038 Query 47536 GAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGA 47595 || |||| ||| ||| || | ||| | || ||| || || | || | ||| | Sbjct 1470039 ATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCA 1470098 Query 47596 GTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 |||| || || | ||| || ||| |||||| || |||||||||||| || | || | Sbjct 1470099 ATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCA- 1470155 Query 47654 ATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 |||| || || | |||||| | ||||| ||||||||||| |||| Sbjct 1470156 ATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATC 1470215 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 ||||||||||||||||||| || ||||| | ||||||| | |||||| | || Sbjct 1470216 CTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTG 1470275 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | ||| | ||||||||||||| || | |||||| Sbjct 1470276 GATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCAT 1470335 Query 47833 TTAATTTATTAAAATCAAACTTGTTATTTATAACAAACCTATTAAGT--------GCTAT 47884 ||| || ||||||| || || || ||| | |||| ||| || | ||||| Sbjct 1470336 ATAACTTTTTAAAATTGAA-TTCTTTTTTTTC-CAAATCTACAAATTTACATAAAGCTAT 1470393 Query 47885 AGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACA 47944 |||||| | |||||||||||| || |||| ||| ||||||| || |||||| ||| Sbjct 1470394 AGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACA 1470453 Query 47945 TAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG--TTACATG 48000 || |||| |||||| |||||||||||||||| ||||| ||| ||| ||||| | Sbjct 1470454 TAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATT----TTGCATTACAAG 1470509 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 || || || |||||| | ||| ||| |||||||| || || | |||| || Sbjct 1470510 AATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACC 1470569 Query 48061 AAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT---TATTATCATGTTCGTATTTAGTA 48116 | | | || | ||| | ||| | | | | |||| || | ||| ||||||||| Sbjct 1470570 ATAAA-TCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTA 1470625 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || |||||||| || || | | | ||| || ||||||||||| |||||| Sbjct 1470626 TATAATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACAC 1470685 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || |||| ||||| | || | ||| ||||| ||||||| | ||| || | ||| | | Sbjct 1470686 ATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACA 1470745 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| | | ||||| |||||| || ||| ||| || | | || | | Sbjct 1470746 GCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAA 1470805 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | |||||| | |||||||||||| | ||| | || | || ||||| Sbjct 1470806 AATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTT 1470865 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| ||||||| ||| ||||||||||||| || || | | Sbjct 1470866 CCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAA 1470925 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACT-TCCACTAGCTCTTATATTACTAAT 48475 ||||| ||||| |||||||| || ||||||| | | | ||||||||| | Sbjct 1470926 CCATTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGTC-CTCTTATATCTTGTAC 1470984 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || | ||| ||||| ||||| ||||| |||| |||||| |||| || || ||| | Sbjct 1470985 TGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAA 1471044 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 ||| ||||| ||| ||| || |||| ||| | |||||| ||||||||| || Sbjct 1471045 AATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAACAAGAAGACATTTGTGGTCT 1471104 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 |||||||||||||| ||||| |||| |||||| |||| |||||| || | || Sbjct 1471105 TGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAA 1471164 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | ||||||||| | | | |||||| || | ||||||||| ||||| || | ||| Sbjct 1471165 ATGATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCAT 1471224 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || |||||||||||||| |||||| ||||| || || | ||| ||| |||| Sbjct 1471225 TAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTC 1471284 Query 48776 CAATGTTTTAAAACCAAAATA 48796 ||| |||||||| |||||||| Sbjct 1471285 CAACGTTTTAAATCCAAAATA 1471305 Score = 315 bits (348), Expect = 8e-81 Identities = 623/908 (69%), Gaps = 33/908 (4%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| ||||||||| || || |||||||| ||||| || || |||||||| | Sbjct 149889 CATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTG 149948 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| || | ||||| ||| |||||||||||| || | ||||| | |||| Sbjct 149949 AAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCC 150008 Query 18777 TAA---TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACA 18833 ||| |||||||| | ||||| || ||||||| |||||| ||| | | | Sbjct 150009 TAAACATTCTAATAAT---CTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGA 150065 Query 18834 ATTCATTCCTATTAATTTAACAGGTAGTGCATC---TGTAAGAAATTCTTGTTCTATATT 18890 ||||||||||||||| | | |||| | || | ||| | || ||| || | | Sbjct 150066 ATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGAT-CTT--TCAACTTC 150122 Query 18891 TACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT- 18949 ||| || ||| | ||| | || | | ||| | | || ||| || | Sbjct 150123 TACAGCTTCTTTAACGATATTTTGTACCATTTGTTC--TGGAAGTTTATT----ATCTAA 150176 Query 18950 TAAAC-----ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || || || |||||| ||||| ||| || |||||||| || ||||| Sbjct 150177 TAAACTATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTC 150236 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCA 19062 |||| |||||| ||||| | | | | | || ||| | ||||| || || | | | Sbjct 150237 ATTACTAAATGTCAAACCGTGTA--ATTTATTTTGTTTCTTAAACCAAAAAATTGCACAA 150294 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| || ||||| ||||| || |||| |||||| | |||||| || || Sbjct 150295 AAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCA-AA 150353 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | | || | ||| || ||||||||| |||||| || || |||||||| || Sbjct 150354 CGA--ATTAGTATCATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGG 150411 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 || | ||||||| || ||||| || | | || | | |||||||| ||| ||| Sbjct 150412 ATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCA 150471 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || |||||||| || ||||||||||||||||||||| ||| || ||||| ||||| Sbjct 150472 ATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAAT 150531 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAAC 19361 | | ||||| ||||| || || || || |||| ||| | | |||||||||| || Sbjct 150532 TTTTTAGCTTCCGTTATTTGAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATAC 150590 Query 19362 TATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 ||| |||||||| ||||||||||||||||| ||||| || ||||||||||| |||| | Sbjct 150591 TATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTC 150650 Query 19422 GGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 | ||| | | |||| || | ||| |||||||||| | |||||| |||||||||| Sbjct 150651 ATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAA 150710 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 |||||| || ||||| || || | | ||| | |||| ||||| ||| ||| ||| | Sbjct 150711 AGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATATAAAGT 150770 Query 19542 AAATCTAT 19549 ||||| || Sbjct 150771 AAATCGAT 150778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103340518280