Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6 239 5e-58 >seq6 Length=3179732 Score = 239 bits (264), Expect = 5e-58 Identities = 556/831 (67%), Gaps = 13/831 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| ||||||||| ||| | |||| | | || ||||| ||||| ||||||| Sbjct 149889 CATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTG 149948 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| || ||||| ||| ||||||||| | || | || || ||| Sbjct 149949 AAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGAGCATCC 150008 Query 36992 TAATTCCTTCAGA-AGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| | | ||||| |||||||||||||| |||| | |||| ||| | | | Sbjct 150009 TAAA-CATTCTAATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAAT 150067 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || |||| | ||| | | || | ||| | |||| | | ||||| Sbjct 150068 TCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAG 150127 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | |||||||| ||||| | | || ||| | | || | ||| | || | | Sbjct 150128 CTTCTTTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAAA 150187 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 ||| || |||||| |||||| |||||||||||||| || ||||||||| ||| | Sbjct 150188 TTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATG 150247 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 | || || | | | | | ||| |||| |||||| ||||| |||| ||| | Sbjct 150248 TCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGA 150307 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 | || || |||||||| |||| || |||| | | | | || | || || || Sbjct 150308 ATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACG---AATTAGTAT 150364 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 || |||||||||| || ||| ||| || ||| || || |||| || | Sbjct 150365 CATTAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAG 150424 Query 37411 CTTTTAAGAGAAAGtt--tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 | | || | || || | |||||| |||| | |||||| ||||||||| |||||| Sbjct 150425 CATGAAATA--AATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACT 150482 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||| |||| || ||||||||||| | |||||| ||||| |||||| ||||||| Sbjct 150483 ATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTC 150542 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | || |||||| || | |||||| | |||| || ||||| ||||| |||||||| Sbjct 150543 CGTTATTTGAACCTCTCTTAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACT 150602 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT--AATTTT 37646 |||||||| || || | |||| |||||||||||| | |||| ||| || ||||| Sbjct 150603 TGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCAT--TTTCATTCAATTTC 150660 Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | |||| || | ||| | |||||||||| ||| || | ||||||||| Sbjct 150661 TCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAA 150711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311047123080