Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq4 96.9 3e-15 >seq5 Length=2641308 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || |||||||||||| || || || Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || ||| | | || | ||| |||||| || ||||| ||| | || ||| Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2485575 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | || ||||| || |||||||| |||||| | || | | |||||| Sbjct 2485574 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2485515 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || |||||||| ||||||||| | ||| ||||| Sbjct 2485514 AATATTCAAAAGGAATCTACTTTACACTTGGTA 2485482 >seq4 Length=1968205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 28634 GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGG 28693 ||||||| || || ||||| ||| | || || ||||| ||| | || ||||| || Sbjct 458685 GCAAAAATTCAA-GATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGG 458743 Query 28694 CAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCT 28753 |||||||| |||||| | |||| | | ||||||||||||||||| |||||||| | Sbjct 458744 AAAACAATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATT 458803 Query 28754 GCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| | || ||||||||| |||| || || Sbjct 458804 ACACTTAGTGTTAAGATTAAGAGGTGGTAT 458833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425400771549483