Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 379 1e-100 >seq6 Length=3179732 Score = 379 bits (420), Expect = 1e-100 Identities = 1039/1555 (67%), Gaps = 86/1555 (6%) Strand=Plus/Plus Query 25012 AATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGA--AGTGAATGGTTCAAAA 25069 || |||||||||| ||||||||||| | |||| | | | ||| |||||||||| Sbjct 1469827 AAAAAATTCTCCACTTAAAACTCTTCTA--TAATAAATATTACTAGTATATGGTTCAAAG 1469884 Query 25070 CATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGC 25129 ||||||| ||||||| ||||| ||||||||||| |||||||| ||||| ||||| Sbjct 1469885 GATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATAGGTGCTAATAATAAT 1469944 Query 25130 GAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAAAT---TA 25186 || ||||| ||||||| |||| || | |||||||| ||||||||| ||| | Sbjct 1469945 GAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCCCAATCCCAATATTTG 1470004 Query 25187 TTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCA---CTTGCTGCA 25243 ||||| |||| || | || || ||| ||||||||||| | || ||||||| | Sbjct 1470005 TTATC-AACTT--TAGCATTC-CACATA--TCAAATTGTAATATACCTTGGCTTGCTGGA 1470058 Query 25244 GGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTTGATTGCTCT 25303 ||||| ||| | |||| || | | || |||| || || ||| Sbjct 1470059 CTTCCTTGAT---AAGATTCATATGGTCCATGTATTGAAGCCAATTCAACAGACATTTCT 1470115 Query 25304 AACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTTTTTCTCCA 25363 || ||||||||||||||| ||||||| || ||| || || || ||||| | || Sbjct 1470116 AAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA----TT--CTTTTGCAGCA 1470169 Query 25364 TCGAAAGCA-----ATTTCC-ATTAAGGCGAACGTATCTGCTAATCCCTGAACTCCTAAT 25417 || | || || || | ||| || |||||||||||||| ||||| || | Sbjct 1470170 TCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATA 1470229 Query 25418 CCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATTTGTA 25477 |||| || | |||| || ||||| | | | | |||| |||||| ||||| | Sbjct 1470230 CCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCTT 1470289 Query 25478 TCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCA--ACTCAATAA 25535 || || | ||||||| ||| || | || |||| ||| |||| | ||| ||| Sbjct 1470290 TCTATAATTTTATCTAAATTTCTTGTAATAAT-TTTG-GTAATTTCATATAACTTTTTAA 1470347 Query 25536 AGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGATTGATG 25595 | | || | | ||| | || | |||||||||| ||||||| || |||| Sbjct 1470348 AATTGAATT---------CTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATG 1470398 Query 25596 CTAAATTACAAACAGCTTGTTCTTTCCCGTCAGA-ATATTCATTGATCTCGATACATAAG 25654 | |||||||| ||||| ||| | | | || |||||| | || || ||||||| Sbjct 1470399 CCAAATTACATACAGCAACTTCAT-CAGGAGAGGTATATTCGATAATTTCACAACATAAG 1470457 Query 25655 TTGCTAGATTTGAT--TACTCCATAATTCTTTTGATT--ATTGCATGTATTGACAATA-T 25709 || ||| |||| || ||| ||| |||| || ||||| ||| || ||| |||| | | Sbjct 1470458 TTACTACATTTAATAGTAC-CCA-AATTTTTCTGATTGGATTT--TGCATT-ACAAGAAT 1470512 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAA 25769 |||||||| | |||||| ||||||||| ||||| | ||| || ||| | Sbjct 1470513 CTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATA 1470572 Query 25770 GTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTAAAGTT 25829 ||| || ||| | ||| || |||| | | ||| | | || Sbjct 1470573 AATCTTGAGCAAGAACTGTTTTTT-----TTCCCAT-------ATTTTCTTCTTCATATT 1470620 Query 25830 CAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAATAT 25889 | | || || | | || ||| || |||| | || | || | | || Sbjct 1470621 TAGTATATAATTTTTCAAATTCTTCACCCCAA-GTTTCACTTAAACCTGGACATTCAT-- 1470677 Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||||| | ||| ||||| ||||| | |||| ||| |||||| | ||| |||| Sbjct 1470678 TTGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAA 1470737 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 ||| | |||||||||||||||| ||||| | |||||||||||| || |||||| ||| Sbjct 1470738 CCCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTA 1470797 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 |||||| || ||||| |||||||| ||||||||||| | ||| | |||||| || | Sbjct 1470798 AATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCT 1470857 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 | | ||||||||||||||||||||| ||||||||||| ||||| |||||| | ||||| | Sbjct 1470858 TACGTTTTCCTCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAG 1470917 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCTAATA 26188 | ||||| ||| | || | ||| || || | ||| | | || ||||| ||| ||| Sbjct 1470918 GTACTAAACCATTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGTC-CTCTTATA 1470976 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACT 26248 || || | | ||| || || || || ||| ||| ||||| | | | Sbjct 1470977 TCTTGTACTGCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGC 1471036 Query 26249 GTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAAT 26308 || || ||||| |||| || ||| |||||||| ||| || ||||||||||| | | Sbjct 1471037 GTTTCAAAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAGAAACAAGAAGACATT 1471096 Query 26309 TGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTC- 26367 || | | |||||||||||||| ||||| || || ||||| ||| ||||| ||| Sbjct 1471097 TGTGGTCTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATAT--TTCT 1471154 Query 26368 ---AC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423 || | ||| || ||| ||||| | | ||| ||| || | | || | ||| Sbjct 1471155 GAGACATTAAA--TG-ATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAA 1471211 Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAA 26483 ||| ||| | | | || |||||||| |||||| | ||||| | || ||| Sbjct 1471212 TAGAAACTCTCATTAATAAATGTTGAGGTCTTTCAATAATTTTATTAT--TAATACGTAA 1471269 Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCT 26538 | ||||||||| |||| || ||||| |||||||||||||||| ||| ||||| || Sbjct 1471270 T-AAATAAGATCTTTCCAACGTTTTAAATCCAAAATAATCATAATTAAAATCCCT 1471323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037603790275