Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 >seq13 Length=1076939 Score = 131 bits (144), Expect = 2e-25 Identities = 479/738 (65%), Gaps = 19/738 (3%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 ||||||||||||||| | || | |||||| | ||| | ||||||| | |||||||| Sbjct 508794 AATAACAAAATCATCTGCCTCATTTTGTTGCAACATAAGATACATAGCATATACATAATC 508735 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTT 47915 | ||||||||||| || | | || ||| | ||| |||| | |||| | || || Sbjct 508734 CTTAGCATGTCCCCAATCTCTATATGTATCTATATTACCTA-AGATAATGGATGTTTCTA 508676 Query 47916 ACCTTCAGAGATTGCTTTTAATGC-TCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || || | || ||| | ||| ||||| || | || ||||| ||||| || | Sbjct 508675 ATTTTTTTTGAATTTTTGCAATACCTCTAGTAATTTTTCTTGTAACAAACGTTTCTCCTC 508616 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCAC 48034 ||||||| |||||||||||| | ||||||| || | |||| ||||||||| | Sbjct 508615 TTCTTGGACTTTCATGATTAAATAAAATACCATTAATACAAAACATATTGTATGATTCTC 508556 Query 48035 GATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGAT 48094 ||| || || || | | |||| | |||||| | ||||||| || ||||| Sbjct 508555 TATAATTTATTGTAATATAATGTGCATATAATTTTGCTATGGCATAAGGGGATACTGGAT 508496 Query 48095 AGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGG 48154 | || ||||| | || | || || ||| || || ||| | | |||| || | Sbjct 508495 AAAATGGTGTATTTTCATTTTGAATAGAACATTGAACTTTTCCAAATAATTCAGATGTTG 508436 Query 48155 ATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTC 48214 |||| | ||| | || ||| || | | | | | | | || | | || Sbjct 508435 ATGCATTATAAAATTTAA---TATTTTTAACTTTTGATATTCTTATTCCTTCTAATATTC 508379 Query 48215 TCAGGGTGCCTATGGCATCTG--TCTGACCAGTATACTCGGGCATCTCAAACGAAACCTT 48272 | | || |||| ||| || |||| |||||||| ||||| ||||| || || Sbjct 508378 TTAATGTACCTAAAGCAGTTGCTTCTG--TTGTATACTCAGGCATTTCAAAACTTACTTT 508321 Query 48273 TACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGT-TGAACCTGCTGAATAACCC 48331 ||||||||| || || | | ||||| || |||| ||| | | | | ||| Sbjct 508320 TACATGACTTTGCGCAGCTAAGTTATATATTTCATTCGGTCTTATTTCACATATTAATGA 508261 Query 48332 TCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCATAAATGT 48391 || || ||| || || ||| ||||||||||| || |||| | ||| | |||| Sbjct 508260 ACA-TATATTACTACTATCAAGTAAATCTCCATAATGTAAAATTAACTTATCGAATATGT 508202 Query 48392 GATCAATTCTATGTGTATTAATTAAAGAAGCCCGACG---GACAATACCATGAACCTCAT 48448 ||||||| | | ||| ||| |||||| | ||| | | |||||| || | || Sbjct 508201 GATCAATCCGTTTTGTGTTA---AAAGAACTACAACGTCTTATCACACCATGCACATGAT 508145 Query 48449 ACCCCTTTTC-AAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTG 48507 | ||||| || || || || ||| |||||||||||||||||||| || || | Sbjct 508144 AATTTTTTTCTAACAATAA-CTCGCTTAAATATGAACCATCTTGTCCTGTTATTCCGAAG 508086 Query 48508 ATTAAAGCAACTTTCATA 48525 |||||||||||| |||| Sbjct 508085 ATTAAAGCAACTCGCATA 508068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665487936385640