Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 109 7e-19 >seq6 Length=3179732 Score = 109 bits (120), Expect = 7e-19 Identities = 799/1278 (63%), Gaps = 20/1278 (2%) Strand=Plus/Minus Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTC 75370 || ||||| || || | || ||| | || || |||||||| || ||||| ||| ||| Sbjct 1471140 CATGCAACTCCTACATTGTTTAATTCAGGAACCCCAAGACCACAAATGTCTTCTTGTTTC 1471081 Query 75371 CTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCG 75430 | | | | || | || || || | ||||| | || ||| || | | ||||| Sbjct 1471080 TTGTTATCAATGAAAGCAGATTCTATTGAAGGTATTTTTGAAACGCTAAAACAATGTGCT 1471021 Query 75431 CAAATC--TCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAAT 75487 ||| | ||| || | || |||||||| | ||| | || ||| | |||| | Sbjct 1471020 TTAATTAGTAAAACTG--CAGGAGGTATTGGTGTAGCAG-TACAAGATATAAGAGGACAG 1470964 Query 75488 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 75547 || ||| |||| | || || ||||| ||| ||||| | | || ||| | | || Sbjct 1470963 AATTCTTATATTAGAGGTACCAATGGAATATCTAATGGTTTAGTACCTATGTTAAGAGTT 1470904 Query 75548 TTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCG 75604 ||||| | || || | |||||| |||||| || | || ||||| || | || Sbjct 1470903 TTTAATGATACTGCAAGATATGTAGATCAAGGTGGAGGAAAACGTAAGGGATCGTTTGCT 1470844 Query 75605 GTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAA 75664 || || | |||||||||||| | ||||| | || || | || ||| || ||||| Sbjct 1470843 GTTTATATTGAACCATGGCATTCAGATATATTTGAATTTTTAGATTTAAGAAAGAACCAT 1470784 Query 75665 GGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTT 75723 || | ||||| | | | | ||||| | |||| | | ||| |||| || ||||| Sbjct 1470783 GGAAAAGAAGAAT-TAAGAGCACGAGATTTATTTTATGCTGTATGGGTTCCTGATCTTTT 1470725 Query 75724 CATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGG 75783 |||||| | ||| | || | | ||| | | | |||||| | | ||||| Sbjct 1470724 TATGAAGAGAGTTAAAGAAAATAAAAATTGGACATTAATGTGTCCAAATGAATGTCCAGG 1470665 Query 75784 TCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 | | || | |||||| || |||||| | || || || |||||||| || Sbjct 1470664 TTTAAGTGAAACTTGGGGTGAAGAATTTGAAAAATTATATACTAAATATGAAGAAGAAAA 1470605 Query 75844 TAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCT-CAAATCACAGA 75902 || | || || || | || ||| | ||| ||||| | |||| | || | Sbjct 1470604 TATGGGAAAAAAAACAGTTCTTGCTCAAGATTTATGGTTTGCTATATTACAAAGC-CAAA 1470546 Query 75903 CGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAA 75962 || || ||| |||||||||||| || || ||| ||||||| || || || | Sbjct 1470545 TAGAAACAGGAGTACCATATATGCTATATAAAGATTCTTGTAATGCAAAATCCAATCAGA 1470486 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 | |||||||| || || || | || | || |||||| | || || || | Sbjct 1470485 AAAATTTGGGTACTATTAAATGTAGTAACTTATGTTGTGAAATTATCGAATATACCTCTC 1470426 Query 76023 AGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT--GA 76080 ||||| ||||| || ||||||||||| || || | || | ||| || | Sbjct 1470425 CTGATGAAGTTGCTGTATGTAATTTGGCATCTATAGCTTTATGTAAATTTGTAGATTTGG 1470366 Query 76081 AGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAA 76140 | | | | | || ||| | |||| | ||||||| || || ||| |||| | ||| Sbjct 1470365 AAAAAAAAGAA--TTCAATTTTAAAAAGTTATATGAAATTACCAAAATTATTACAAGAAA 1470308 Query 76141 TCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATAT 76200 | || | | | || || ||||||| |||||| || | || || ||||||| Sbjct 1470307 TTTAGATAAAATTATAGAAAGAAATTATTATCCAGTCAAAGAAGCAAAAACATCTAATAC 1470248 Query 76201 GCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCG 76260 |||| || ||||||||| | ||||||||||| | || ||| |||||| || | | Sbjct 1470247 TAGACATAGGCCTATTGGTATTGGTGTTCAAGGATTAGCAGATACATTTATGTTATTAAG 1470188 Query 76261 CTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTA 76320 || ||| ||| || |||| || || || ||||| | || |||||||| ||||| Sbjct 1470187 ATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAAAGAATATTTGAAACTATGTA 1470128 Query 76321 TCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATT 76380 | | || | | || | | |||||||||| | || || | ||||| | | Sbjct 1470127 TTATGCTGCTTTAGAAATGTCTGTTGAATTGGCTTCAATACATGGACCATATGAATCTTA 1470068 Query 76381 TGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA 76440 | | || ||| || |||||| | | || |||||||||||| | | | || | Sbjct 1470067 TCAAGGAAGTCCAGCAAGCCAAGGTATATTACAATTTGATATGTGGAATGCTAAAGTTGA 1470008 Query 76441 GCTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAA 76497 ||| || || ||||||| | || | ||| | | ||| | | || Sbjct 1470007 TAACAAATATTGGGATTGGGATGAATTAAAAGCTAAAATCCGTAAACATGGTTTAAGAAA 1469948 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 | | || | ||||| |||||||| || || || ||||||| | || || ||||| Sbjct 1469947 CTCATTATTATTAGCACCTATGCCAACTGCATCTACTTCACAAATTCTAGGAAACAATGA 1469888 Query 76558 ATGCTTTGAACCATACAC 76575 || |||||||||||| || Sbjct 1469887 ATCCTTTGAACCATATAC 1469870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563805817760