Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 190 4e-43 seq4 156 8e-33 >seq5 Length=2641308 Score = 190 bits (210), Expect = 4e-43 Identities = 179/227 (79%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| || || |||| || || ||||||||| || ||||| || || ||| || Sbjct 2485482 TACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTC 2485541 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 2485542 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 2485601 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | || | ||| ||| ||||| || | |||||| || || || || ||||| Sbjct 2485602 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2485661 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAAT 193377 || |||| ||||||||||| ||||||||||| ||| |||||||| Sbjct 2485662 TCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTA--AAAATAAT 2485706 >seq4 Length=1968205 Score = 156 bits (172), Expect = 8e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| |||| | || | || ||||||| || || ||| || Sbjct 458840 AATTTGCATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTT 458781 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || ||||| ||||| ||| |||||||||||||| ||||| |||||||| ||||| Sbjct 458780 ATAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTG 458721 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || ||||||||||||||||| ||||| | || | ||| ||| || || || Sbjct 458720 GTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGA 458661 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 | ||| || || || ||||||||||| ||| Sbjct 458660 TGGCTCGACGTCAAGGGTTATAGTTTTTCCT 458630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899645662106640