Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6 275 9e-69 seq5 141 1e-28 seq4 127 3e-24 >seq6 Length=3179732 Score = 275 bits (304), Expect = 9e-69 Identities = 572/842 (68%), Gaps = 17/842 (2%) Strand=Plus/Plus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| ||||| ||||||| || || ||||| ||||||| | ||| ||||| Sbjct 149901 TTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTAA 149960 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGTAT 17980 | ||| ||| ||||||||| ||| | || |||| | || ||| | | Sbjct 149961 GTCCATCCAATTAAATGGATTTTTGGAATGGAAAA--TTTTAGAGCATCCTAAACATTCT 150018 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAG 18039 ||||||||||| || |||||||| | |||||| ||||| || || ||||||| |||| Sbjct 150019 AATAATCTATCAGCAACAAATTCTATATATTGAGACAT-AAGTCTAGAATTCATTCCTAT 150077 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || | |||| | ||| ||||| | | || | || |||| ||||| | Sbjct 150078 TAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAAC 150137 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 || ||| |||| | || ||| | ||||||| || | ||||| | ||| || Sbjct 150138 GATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACTATAA---ATTAAGCA 150194 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| || ||||| ||||||||||| |||||||| |||||||| || || || Sbjct 150195 ATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAACC 150254 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 | | | | || | ||| || | |||||| || | ||||||| | || ||||| Sbjct 150255 GTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAATAT 150314 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA- 18338 || ||||| || || || | | |||||||||||| | ||| | ||| || Sbjct 150315 TCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACG---AATTAGTA-TCATTAA 150370 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||||||| ||||||| | ||| | || ||| | |||||||||| || Sbjct 150371 TCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCATGAA 150430 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | |||| | ||||||| |||||| |||||| | || ||||| ||| ||| ||| Sbjct 150431 ATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTATATGTTT 150490 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | ||||| || |||| | |||||| ||||| |||||| | |||| || | || Sbjct 150491 CTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCGTTATTT 150550 Query 18519 GAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 ||| ||| || ||||| ||| ||| ||||||| || |||||||| ||| | ||| Sbjct 150551 GAACCTCTCT-TAAAAACTTACTAGCCAAATTTTCTAATACTATACCATCACTTGCTGCA 150609 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637 |||||||| || |||| || || |||||||| ||||| || || | || | | || Sbjct 150610 AAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCAAAATCT 150669 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 | || ||| | |||| ||||| |||||| | |||||||||||| | ||| || | ||| Sbjct 150670 TTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCTTTCTTG 150729 Query 18698 TA 18699 || Sbjct 150730 TA 150731 >seq5 Length=2641308 Score = 141 bits (156), Expect = 1e-28 Identities = 182/248 (73%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 155765 aaaataatagagaaacaataaagtatttattgtttataataaaaatttatgtaataaaat 155824 |||| || | |||| | |||| | ||| || ||| | | | |||| | || ||||| Sbjct 2485745 AAAAAAAGATAGAATC--TAAATTTTTTTTTTTTTCTTTTCATTATTTTT--AAGAAAAT 2485690 Query 155825 gcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGA 155884 |||||| ||| | |||||||| ||||||||||| ||||| | || || || ||||| Sbjct 2485689 GCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATCTGA 2485630 Query 155885 TAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACA 155944 || ||| || || || ||||| |||||||||||||| || ||||| || ||||| Sbjct 2485629 TACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACA 2485570 Query 155945 AAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 |||||| || | ||| || || || | |||||| || || ||||||||||||||||| Sbjct 2485569 AAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATAT 2485510 Query 156005 ATCCAAAG 156012 || |||| Sbjct 2485509 -TCAAAAG 2485503 >seq4 Length=1968205 Score = 127 bits (140), Expect = 3e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 ||||||||||| || | || ||||| ||||| | ||| || || || ||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 458690 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || ||||||||||| || | ||| || || || Sbjct 458691 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACAA 458750 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTT 156028 | |||||| |||||||||||||||||||| || || ||| || | || | || || Sbjct 458751 TTAGAAGATGGAAGAACTTTATCAGATTATAACAT-TCAAAAGGAATCTACATTACACTT 458809 Query 156029 AGTGTTAAGATTAAGAGGCGGT 156050 |||||||||||||||||| ||| Sbjct 458810 AGTGTTAAGATTAAGAGGTGGT 458831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731864891693200