Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 279 1e-69 seq5 187 5e-42 seq4 141 2e-28 >seq6 Length=3179732 Score = 279 bits (308), Expect = 1e-69 Identities = 544/794 (69%), Gaps = 22/794 (3%) Strand=Plus/Plus Query 49580 TGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAA 49639 ||| ||||| | ||| ||| |||||||||||||| || || ||||| | | | Sbjct 149952 TGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAA-ATTTTAGAGCATCCTA 150010 Query 49640 TACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCA 49698 |||| |||||||||||| || |||||||| | |||||| ||||| | | | |||||| Sbjct 150011 AACATTCTAATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCA 150070 Query 49699 TACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagctt 49758 | || | ||| | | ||||||| | ||| ||||| | |||| | ||||||||||| Sbjct 150071 TTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTT 150130 Query 49759 gtttaattatcataattatattatt--ttttgataattta-tatttaatatgattcgcat 49815 ||||| || || || || ||| || || | |||| ||| ||||| | || Sbjct 150131 CTTTAACGAT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----AT 150184 Query 49816 atattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAA 49875 | ||||| || |||||| |||||||| || || || ||| || ||||||||||||| Sbjct 150185 AAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAA 150244 Query 49876 AAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 | || || || || ||| || | | || |||| |||||| |||| |||||||| | Sbjct 150245 ATGTCAAACCGTGTAATTTATTTTGT-TTCTTAAACCAAAAAATTGCACAAAAACTACCA 150303 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAAC--ATTAATT 49992 || ||||| || || ||||| ||| || | |||||| | ||||| |||| Sbjct 150304 CTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTA--G 150361 Query 49993 TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 |||||| || ||||| ||| ||||| |||||| ||||| | | ||| ||||||| Sbjct 150362 TATCAT-TA--ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTT 150418 Query 50053 CTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATA 50112 ||||||| | |||||| | | |||| | ||||||| Sbjct 150419 CTATAGCATGAAATAAATTTAATCTTTCTTTTTCATCTTTAATATAATTATCAATTAATA 150478 Query 50113 AAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTG 50172 || ||| |||| ||||| | | ||| | |||||||||||| |||||||||| | | | Sbjct 150479 AACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAG 150538 Query 50173 CTTCTGAATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCA 50231 |||| | ||||| || || || | | | | | ||||| || |||| |||||| Sbjct 150539 CTTCCGTTATTTGAACCTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCA 150597 Query 50232 TCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAA 50291 ||| |||||| || |||||||| || | || ||||||||||| ||||| || || || Sbjct 150598 TCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAAT 150657 Query 50292 TTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 || || || || | ||| | |||||||| | ||||||| ||||||||| || ||| Sbjct 150658 TTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCT 150717 Query 50352 ACGGATTTTTTATA 50365 | | ||| || || Sbjct 150718 TCAGCTTTCTTGTA 150731 >seq5 Length=2641308 Score = 187 bits (206), Expect = 5e-42 Identities = 176/222 (79%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCAT 192385 ||| || |||||||||| || ||| || ||||||||||| ||||| || | | |||| | Sbjct 2485482 TACCAAGTGTAAAGTAGATTCCTTTTGA-ATATTATAATCTGATAAGGTCCTTCCATCTT 2485540 Query 192386 CCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTT 192445 | |||||||| |||||||| |||||||| ||||||||||| || |||||||||||||||| Sbjct 2485541 CTAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTT 2485600 Query 192446 GTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTT 192505 | ||||| || ||||| || | ||| || | || || || || |||||||||| Sbjct 2485601 GAATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTT 2485660 Query 192506 TACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 | |||||||||||||| | ||| || |||||||| ||| ||| Sbjct 2485661 TTCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTAAAAA 2485702 >seq4 Length=1968205 Score = 141 bits (156), Expect = 2e-28 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | ||| ||||| ||||| |||| || ||| || || |||||||| Sbjct 458833 ATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGA-ATGTTATAATC 458775 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| |||| | |||| || |||||||| || ||||| |||||||| ||||| ||||| Sbjct 458774 TGATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGG 458715 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTT 192452 ||| ||||||||||||||||| ||||| Sbjct 458714 TGGAATTCCTTCTTTATCTTGAATTTT 458688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984470199193950