Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 275 1e-68 seq5 178 2e-39 seq4 154 3e-32 >seq6 Length=3179732 Score = 275 bits (304), Expect = 1e-68 Identities = 573/848 (68%), Gaps = 26/848 (3%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | ||| |||| || ||||||||||||||||||| | ||| |||| Sbjct 149900 ATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTGAAGTGAAATTA 149959 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| ||| |||||||||||||| | | || ||||| | | | ||| | | Sbjct 149960 AGTCCATCCAATTAAATGGATTTTTGG-AATGGAAAATTTTAGAGCATCCTAAACATTCT 150018 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || |||||||| | |||||| |||| | | | ||||||| || | | Sbjct 150019 AATAATCTATCAGCAACAAATTCTATATATTGAGACATAAGTCTAGAATTCATTCCTATT 150078 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | ||||||| | ||| ||||| | |||| | ||||||||||| ||||| Sbjct 150079 AAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAACTTCTACAGCTTCTTTAACG 150138 Query 39069 atcataattatattatt--ttttgataattta-tatttaatatgattcgcatataGTAAA 39125 || || || || ||| || || | |||| ||| ||||| | ||| | ||| Sbjct 150139 AT-AT-TTTGTACCATTTGTTCTGGAAGTTTATTATCTAATAAACT----ATAAATTAAG 150192 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||| |||||||| ||||| || ||| || |||||||||||||| || || Sbjct 150193 CAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTAATTCATTACTAAATGTCAAA 150252 Query 39186 CC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || || ||| || | | || |||| |||||| |||| |||||||| | || || Sbjct 150253 CCGTGTAATTTATTTTGT-TTCTTAAACCAAAAAATTGCACAAAAACTACCACTGAATAA 150311 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAAC--ATTAATTTATCATCT 39302 ||| || || ||||| ||| || | |||||| | ||||| |||| |||||| Sbjct 150312 TATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAAACGAATTA--GTATCAT-- 150367 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| ||| ||||| |||||| ||||| | | ||| |||||||||||||| Sbjct 150368 -TAATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAGGGATATTTTCTATAGCA 150426 Query 39363 TTAAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAT 39420 | |||||| || || | || Sbjct 150427 TGAAATAAATTTAAT--CTTTCTTTTTCATCTTTAATATAATTATCAATTAATAAACTAT 150484 Query 39421 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTG 39480 | |||| ||||| | | ||| | |||||||||||| |||||||||| | ||||| | Sbjct 150485 ATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAATAAAATTTTTTAGCTTCCG 150544 Query 39481 AATACTGAACTTCGGAAAAGAATCGTTC-AACTAAATTCTCAGATACAATACCATCAGAT 39539 ||||| || || || | | | | | ||||| || |||| ||||||||| | Sbjct 150545 TTATTTGAACCTCTCTTAA-AAACTTACTAGCCAAATTTTCTAATACTATACCATCACTT 150603 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 ||||| || |||||||| |||| || ||||||||||| ||||| || || || || || Sbjct 150604 GCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCATTTTCATTCAATTTCTCA 150663 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || || | ||| | |||||||| | ||||||| |||||||||||| ||| | | | Sbjct 150664 AAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTCCAAAAAGAAGCTTCAGCT 150723 Query 39660 TTTTTATA 39667 || || || Sbjct 150724 TTCTTGTA 150731 >seq5 Length=2641308 Score = 178 bits (196), Expect = 2e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 171860 TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATC 171919 ||| || |||||||||| || || |||||||||||||||||| | | | | || || Sbjct 2485482 TACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTC 2485541 Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 |||||||| |||||||| |||||||| ||||| ||||| || ||||||||||||||||| Sbjct 2485542 TAATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTG 2485601 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||||| || ||||| || ||||| || | || || || || ||||||||||| Sbjct 2485602 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2485661 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAA 172080 |||||||||||||| | || || |||||||| ||| ||| Sbjct 2485662 TCCAGTTAATGTTTTTACAAAAATTTGCATTTTCTTAAAAA 2485702 >seq4 Length=1968205 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| ||||| ||||| |||| || || ||| ||||||||| Sbjct 458833 ATACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCT 458774 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | | || || |||||||| || ||||| |||||||| |||||||||||| Sbjct 458773 GATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGT 458714 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| || ||||| || || || || | || Sbjct 458713 GGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCG 458654 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || || || || ||||| || Sbjct 458653 ACGTCAAGGGTTATAGTTTTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127208866600