Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 206 8e-48 seq3 125 2e-23 seq4 95.1 4e-14 >seq6 Length=3179732 Score = 206 bits (228), Expect = 8e-48 Identities = 786/1218 (65%), Gaps = 22/1218 (2%) Strand=Plus/Plus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || |||||| | | ||| || | | Sbjct 1470111 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGCAT 1470170 Query 155371 CAGATGTAAATGCGATATCCATCTTGAA-AAATGTGTCGGCTAAACCCTGAACTCCAATA 155429 ||||| | ||| |||||| | | |||||| || ||||| || ||||| |||||| Sbjct 1470171 CAGATTCATATG-GATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAATA 1470229 Query 155430 CCGACTGGGCGATGCCT-GTAATTGCTCCTGCTTGTCTTCTT-GTTTGGGTAAAAATTCA 155487 || | || | ||| || ||| | | | | ||| |||||| | ||| ||| |||| Sbjct 1470230 CCAATAGGCCTATGTCTAGTATTAGATGTTT-TTG-CTTCTTTGACTGGATAATAATTTC 1470287 Query 155488 CATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCA 155544 || ||||| |||| ||||||| |||| | | ||||| | || ||| || Sbjct 1470288 TTTCTATAATTTTATCTAAATTTCTTGTAATAATT---TTGGTAATTTCATATAACTTTT 1470344 Query 155545 CATAGTCAAATG---TTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGAT 155601 | | | ||| |||| ||| || |||||| ||| | | | ||||| |||| || Sbjct 1470345 TAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAAT 1470404 Query 155602 TACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAAC 155661 ||||||| ||| || | | | ||||| | ||| ||||| || | |||| || Sbjct 1470405 TACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGTTACTAC 1470464 Query 155662 TCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAA 155721 || || || || ||||| ||||| || ||||| ||||||| ||| || ||||| | Sbjct 1470465 ATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAATCTTTATATAGCA 1470524 Query 155722 TGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCAT 155781 | ||||| |||||| || || || | | || | ||| | || | ||| Sbjct 1470525 TATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGAGCAA 1470584 Query 155782 TAATTTGCTTGTTGTATCTGCCTTCCGACT-CATATTTCATATACAGCGTTCGGTAATCC 155840 || | | || || | | || | || ||||||| |||| | || | || Sbjct 1470585 GAACT-GTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATATAATTTTTCAAATTCT 1470643 Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTA 155900 ||||| || ||||| | || || || | || || || | | | |||| ||||| Sbjct 1470644 TCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATTAATGTCCAATTTTTA 1470703 Query 155901 TTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTT 155960 || | | || | || |||||| | |||| |||| | |||||| || | || | | Sbjct 1470704 TTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCATAAAATAAATCTCGT 1470763 Query 155961 GCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGA 156020 || || | || || | || || ||||| | || ||||| ||||| ||||| | | Sbjct 1470764 GCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAAATCTAAAAATTCAAATATATCTGAA 1470823 Query 156021 TGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACA 156077 || ||| || | ||| | |||||| || || | || || ||| ||||||||| Sbjct 1470824 TGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCCTCCACCTTGATCTACA 1470883 Query 156078 TACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTG 156137 || | ||||| | ||| || || | || |||||| | | |||||| || | |||||| Sbjct 1470884 TATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACCATTAGATATTCCATTG 1470943 Query 156138 GTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCT 156197 || || | ||||| ||| | | | || || | || |||||||| ||| Sbjct 1470944 GTACCTCTAATATAAGAATTCTGTCCTCTTATATCTTGTACTGCTACACCAATACCTCCT 1471003 Query 156198 GACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCA 156257 | |||| |||| ||| |||| |||| || | |||||||||||||||||||| Sbjct 1471004 GCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTTCAAAAATACCTTCAATAGAATCT 1471063 Query 156258 TCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAAT 156317 ||| |||||||| | | || ||| | ||| |||| ||| ||||| | || || Sbjct 1471064 GCTTTCATTGATAACAAGAAACAAGAAGACATTTGTGGTCTTGGGGTTCCTGAATTAAAC 1471123 Query 156318 AGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATC 156377 | |||||| |||||||| ||||||| || | |||||| ||| ||||| | || || | Sbjct 1471124 AATGTAGGAGTTGCATGGGTAAAATATTTCTGAGACATTAAATGATATGT-TTCTAAAGC 1471182 Query 156378 -TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACG 156436 || || | | | || |||| ||||| || ||||| | | ||| ||||| | Sbjct 1471183 TTTATCTATGTCATCTATATGTATACCAATAGAAACTCTCATTAATAAATGTTGAGGTCT 1471242 Query 156437 CTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAA 156496 || | ||| || ||| || | | || | | ||||| |||||||| || || Sbjct 1471243 TTCAATAATTTTATTATTAATACGTAATAAATAAGATCTTTCCAACGTTTTAAATCCAAA 1471302 Query 156497 ATAATCAAACAGAAAATC 156514 ||||||| | |||||| Sbjct 1471303 ATAATCATAATTAAAATC 1471320 Score = 127 bits (140), Expect = 6e-24 Identities = 229/335 (68%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || |||||| || || ||||| ||||| ||||| |||| | ||| || | || || Sbjct 2581291 CTTCTTTTTGATCCTACGGCATCGATTTCATCAATAAAAACAATACATGGTGCATGTTTC 2581350 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || | ||| | |||||||| | ||| || | ||||||| |||||||| || Sbjct 2581351 TTTGCTGCTTGAAAAAGTTCTCTTATTCTCCTTGCACCTACACCAACAAACATTTCTTCA 2581410 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | || |||| | |||| ||||| ||||| ||||| | ||||| || Sbjct 2581411 AATTCTGAACCTGAGGCTTGTAAAAATGGAACATTAGCTTCTCCTGCAATAGCCCTAGCA 2581470 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || || || || ||| ||| ||||| || || ||||||| ||| || Sbjct 2581471 ATTAATGTTTTTCCGGTACCTGGTTCTCCTGATAATAAAATACCTTTTGGTAATTTGGCA 2581530 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 ||| || |||| || | | |||||| | || | |||||| || || || | | Sbjct 2581531 CCAATTTTGGTAAATTTATCTGAATTTTTTAAATAATCAATAATTTCTTCTAGCTCCTGT 2581590 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | |||||||||||| ||||| ||||| || Sbjct 2581591 TTCACTTCATCACATCCTTTCACATCTGCAAATGT 2581625 >seq3 Length=1843035 Score = 125 bits (138), Expect = 2e-23 Identities = 340/509 (67%), Gaps = 31/509 (6%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| | ||||| ||||| ||||| ||| || || | Sbjct 640587 CTATCAAATCTACCTGGTCTAGTAATAGCTGGATCTAAAATATCTACTCGATTCGTACCA 640646 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTG 288965 || || ||||| | || ||| | | | | |||||||||||| | || ||||| Sbjct 640647 GCTAAAACAACTACCTTATCATTAGATGTA-TGAAATCCATCCATCTCTACTAGCATTTG 640705 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC--CGAATCGCTCCtt 289023 ||| | ||| | ||| |||||||| || ||||| |||| |||| | | |||| Sbjct 640706 ATTTAATGTGTTTTCTCTTTCATCGTT---ACCTC------CACCAGCGAAAC-CACCTT 640755 Query 289024 --------tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| |||| |||||||||||||| || || ||||| | | | || | || || Sbjct 640756 TTGATCTCTTTCTACCGACAGCATCAATTTCATCTATAAAAATTATAGAAGGTGCATGTT 640815 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 ||| || ||||||||||||| || | |||| || | |||||| | | ||| | Sbjct 640816 TTCTTGCTTGAGCAAATAATTCTCGAACCCTTGATGGACCTATTCCAACAAAAACTTCAA 640875 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 ||| ||| | || || | || |||| ||||||||||| || ||||| || | | Sbjct 640876 TAAAATCACTACCGCTTATATTAAAAAATGGAACATTTGCTTCTCCAGCTACAGCTTTTG 640935 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || | || || || || || || | || ||||| | || || |||| ||| | Sbjct 640936 CTAGTAAAGTTTTCCCGGTACCCGGGGCACCACATAATAATGCACCTTTAGGTATTTTAG 640995 Query 289256 C-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | |||| | | || |||||| || | |||||||| ||||||| |||| || ||| Sbjct 640996 CACCCA--ATATTTCATATTTAGTTGGATTTTTTAAAAAATCTACAAATTCCATAATTTC 641053 Query 289314 ATATTTTGCCT-CATCACATCCTGCTACA 289341 | ||| || | | ||| | || |||||| Sbjct 641054 TTCTTTAGCTTGCTTCATA-CCAGCTACA 641081 >seq4 Length=1968205 Score = 95.1 bits (104), Expect = 4e-14 Identities = 374/579 (65%), Gaps = 17/579 (3%) Strand=Plus/Minus Query 288679 GCTAAAATAACCGCCTCATTCGCCATATTTTCAATATCCGCTCCTGAAAATCCAGATGTT 288738 ||||||||| |||||||| | | |||||| | ||| || || ||||| |||| |||| Sbjct 1539763 GCTAAAATAGTAGCCTCATTTACAACATTTTCTAAATCTGCACCAGAAAACCCAGGTGTT 1539704 Query 288739 AGAATTGCGATTTCATCTAAATCGGT--ATTAGGCATTACATTTTTACGCTTTAA-ATGG 288795 | |||| || | || | ||| ||| || || ||| ||||| || Sbjct 1539703 AATCTTGCTATCTTTTCAATATCTTCTAATTTTAAATCACTTTTAATTTTTTTAATATAT 1539644 Query 288796 ACGTCTAAAATTTTACGACGACCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCA 288855 | ||||||||||| | ||| | ||| || || || || |||||||| Sbjct 1539643 ATTTCTAAAATTTTCTTTCTTCCATTAATATCGGGTAATGGTACATAAACGATCCTATCA 1539584 Query 288856 AACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAAT 288915 || ||||| | || ||| || |||||| |||| ||||||||| || | | Sbjct 1539583 AATCTACCTGGTCGTAATAAAGCACTGTCTAAGGTATCAATTCTGTTTGTCGCACCTATA 1539524 Query 288916 ACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTT 288975 || | |||| | | || | ||||||||||||| ||| | |||||| | |||| Sbjct 1539523 ACCATAATATGTACAGTATTACTAAATCCATCCATTTCAACTAATAATTGATTTAATGTT 1539464 Query 288976 TGTTCCCTTTCATCATTTGAACCT----CTTGAATCA---CCCGAATCGCTCCttttttt 289028 || || ||| || |||| |||| | | || || || ||| ||||| ||| Sbjct 1539463 TGATCATGTTC-TC-TTTG-ACCTGCACCGTTAA-CAGATCCTGAA---CTCCTCTTTCC 1539411 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | | |||| | | ||| ||| || Sbjct 1539410 ACCAATTGCATCAATTTCATCAATAAATACAATGGATGGAGCAACTGATCTTGCATGAGC 1539351 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | | || | || || |||| ||||| ||||||| |||||| | | Sbjct 1539350 AAATAACTGCCGTATTCTTTTAGCCCCTTGACCTACATATATTTCTATAAATTCTGGTCC 1539291 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | ||| ||| ||||| ||||| |||||| || || || | | || || Sbjct 1539290 AGAAGTATAAATATATGGAACATTAGCTTCAGTTGCTACAGCTCTAGCTAACATGGTTTT 1539231 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||| ||||| ||||| |||||| ||| |||||||| Sbjct 1539230 TCCTGAACCAGGAGGTCCAACTAATAAAACACCCTTTGG 1539192 Score = 86.0 bits (94), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| | ||| ||||| || || ||||| | | | || | || || ||| || || || Sbjct 1803902 CCAATTGAATCGATTTCATCCATAAAAATAATAGAAGGTGCATGTTCTCTAGCCATAACA 1803961 Query 289090 AATAATTCTCTTAC---ACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||||||| || ||| ||| || | ||| | ||| | | ||| ||||||||| Sbjct 1803962 AATAATTCTCTAACCATACGTGATCCTTC---ACCTATATATTTCTGTACTAATTCAGAA 1804018 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || ||| ||| || || || || | ||||||||| || || | | ||| Sbjct 1804019 CCTGAAACTCTAATAAAGGTACAATCTGTATGATGTGCTACTGCTCTTGCTAATAATGTT 1804078 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || |||||||| || ||||| | ||||| ||||| || ||| Sbjct 1804079 TTTCCTGTTCCTGGAGGTCCATATAATAATACTCCTTTAGGT 1804120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471802947595849