Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 seq7 116 5e-21 >seq6 Length=3179732 Score = 129 bits (142), Expect = 7e-25 Identities = 325/490 (66%), Gaps = 33/490 (7%) Strand=Plus/Minus Query 165952 TAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACA 166011 |||||| || || ||| ||| ||| |||||||||| | | ||| | |||||||| Sbjct 1293531 TAAGGTGGCACAGTTAGTTGGCTATATTGCAGAACATAGTGCATATCATCATGGTGAGTC 1293472 Query 166012 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 ||| |||| || || || | || ||| |||||| || | ||||||||| Sbjct 1293471 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1293412 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 || | |||||| |||||||||||||| ||| |||||| ||||||||| | |||| Sbjct 1293411 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1293352 Query 166132 ATCAAGATATATTTATACCAAA----CCACATAAAATATTAAAATATATATTTAGAGAAG 166187 | |||||||||| | ||| ||| | | | || | | |||||||| ||| Sbjct 1293351 AGCAAGATATATATTTACAAAATTGGCAAGCTCAA----CCAGAAGTATATTTAATGAAT 1293296 Query 166188 AAGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTATTCATT 166235 | ||||| || || ||||| ||| | || || || |||||| ||| Sbjct 1293295 ACGATGATCCCATATTAAAATATTTAAATGAAGAAGGACAGAAAATTGAACCACAATATT 1293236 Query 166236 TTATTCCAGTAATCCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGT 166295 ||| ||||| || ||| ||| ||| | ||||||| | |||||||| ||||||| | Sbjct 1293235 ATATACCAGTGATTCCAACAATATTAGTAAATGGTTGTGAAGGTATTGGTACAGGATATT 1293176 Query 166296 CATGTTTTATACCTCAATATAATCCTTTAGAATTAATTGATGCTATTTGTTTAAAATTGT 166355 | | |||||||| | |||||| | ||| | |||||| || |||||| Sbjct 1293175 CTTCATTTATACCGAATTATAATTATAAAGATATTATTGATAATA-----TTAAAA---- 1293125 Query 166356 TAAACaaaaaaaataatggcataaacaatctttg--tcctttttataaaaattttaaagg 166413 | ||| ||| || || ||| || | || || ||| | |||||| |||||||||| Sbjct 1293124 GATACATAAATAAAGAT-CCATTAA-TACCTATGGTTCCATGGTATAAAGATTTTAAAGG 1293067 Query 166414 taaaataaaa 166423 || |||| || Sbjct 1293066 TAGAATAGAA 1293057 >seq7 Length=700602 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 194587 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 194646 ||||| ||||| || ||||| ||||| || | | ||||| |||||| | |||||||| Sbjct 525340 AAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 525399 Query 194647 CATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGTCGTTC 194705 ||||| |||||| || | | |||||| ||||| ||||||||| || | || Sbjct 525400 CATGCAAGAAGTAGAGGACCATTAACTATGATTACAA-GACAACCAACAGAAGGAAGATC 525458 Query 194706 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 194765 || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| | Sbjct 525459 AAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 525518 Query 194766 TACTCAATTCTTAAATGAAAGAATGTTT 194793 | | || | ||||| |||||| | ||| Sbjct 525519 TGCAAAAATGTTAAAAGAAAGATTATTT 525546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632483456944760