Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 136 4e-27 seq4 127 2e-24 >seq5 Length=2641308 Score = 136 bits (150), Expect = 4e-27 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| |||| || ||||| ||||| || || || || |||| | Sbjct 2485691 ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGA-GCCATC 2485633 Query 24764 -GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || || | ||| ||||| || ||||| ||||||||||| ||||| |||| Sbjct 2485632 TGATACGATTGAGAATGTTAAGGCAAAA-ATTCAAGATAAAGAAGGAATTCCTCCTGATC 2485574 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 ||||| | || || ||||| || ||||| | || ||| || | | | |||||||||| Sbjct 2485573 AACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATA 2485514 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 | |||||||||||||| || |||||||||| Sbjct 2485513 ATATTCAAAAGGAATCTACTTTACACTTGGT 2485483 >seq4 Length=1968205 Score = 127 bits (140), Expect = 2e-24 Identities = 147/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACC-GACACAGTAGA-AACGGTAAAACAAA 24788 || |||||||| || || || || || |||| | ||||| | || || | ||| |||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACCATTGAGAATGTTAAGGCAAA 458689 Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAAC 24848 | || ||||| ||||||||||| || || || |||||| | || || ||||| || |||| Sbjct 458690 A-ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAAC 458748 Query 24849 AGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACT 24908 | | || ||| |||| | |||||||||||||||||||||||||| ||| |||||| Sbjct 458749 AATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACT 458808 Query 24909 TGGTGTTGCGATT 24921 | ||||| |||| Sbjct 458809 TAGTGTTAAGATT 458821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893230369560