Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq4 150 3e-31 >seq5 Length=2641308 Score = 165 bits (182), Expect = 1e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| |||||||| ||||| ||||||| || | | Sbjct 2485690 TGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATCTG 2485631 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| ||| ||||||||| ||||| || ||||||| Sbjct 2485630 ATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAAC 2485571 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || ||||||||||| ||| || || ||| |||||||||||| Sbjct 2485570 AAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAATA 2485511 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| ||||| ||| | || || ||| Sbjct 2485510 TTCAAAAGGAATCTACTTTACACTTGGTA 2485482 >seq4 Length=1968205 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146057 AGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATAA 146116 ||||||||| || || |||| || || | || || ||| | ||||| || || Sbjct 458630 AGGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAA 458689 Query 146117 AATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACA 146176 ||| ||| ||||||||| |||||||| || ||||||||| | || |||||||| ||||| Sbjct 458690 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 146177 ATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTT 146236 |||||| ||| ||||| ||| |||||||||| || ||||| ||||| || | || || Sbjct 458750 ATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTT 458809 Query 146237 AGTATTACGATTAAGAGGAGGTA 146259 ||| ||| |||||||||| |||| Sbjct 458810 AGTGTTAAGATTAAGAGGTGGTA 458832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786158764358840