Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 125 9e-24 seq7 116 5e-21 seq6 114 2e-20 seq5 96.9 4e-15 seq4 87.8 2e-12 >seq9 Length=827030 Score = 125 bits (138), Expect = 9e-24 Identities = 311/468 (66%), Gaps = 23/468 (5%) Strand=Plus/Plus Query 168657 GATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGAC--- 168713 |||||||| || |||||||| ||||||||||||||| || ||| |||||| | Sbjct 500618 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAATATG 500677 Query 168714 TGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTA 168773 | ||||| || | | ||||||| || ||||||| ||| ||||| | |||| Sbjct 500678 TATGATAATTATGAAAATA---AAGGAGTGGATCAATTAA---AAAATATAATAAATTTA 500731 Query 168774 CACAACAAT---CCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGTACCACAACTT 168830 || ||| || || ||||||||| | | | ||| ||||| | | ||| Sbjct 500732 ATTAAAAATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTT 500791 Query 168831 GATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAA 168886 || |||||| | || |||||||| | |||| || |||||||| | | ||| Sbjct 500792 GACCAAATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAA 500851 Query 168887 ATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTA 168946 | ||| | ||| | ||||||||||||| ||||||||| |||||||||||| Sbjct 500852 TT--ATCATGTATTAT-----GTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTT 500904 Query 168947 TAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCC 169006 |||||||| | |||||| |||| || | | || | || ||||||||| || Sbjct 500905 TAATATTGCTTCTTATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACC 500964 Query 169007 TGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTT 169066 || |||| || || ||| ||| ||| || || ||| || || |||| ||| Sbjct 500965 TGCGCAGTTCATACACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGATAGTTT 501024 Query 169067 AAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 ||| ||||| | || |||| ||| ||| | || |||| ||||||| Sbjct 501025 AAAAATTCAACTTAACAGAATACCCTATCCATTCCCAACACTTAAATT 501072 >seq7 Length=700602 Score = 116 bits (128), Expect = 5e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 193791 AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 193850 ||||| ||||| || ||||| |||||||| | | |||||||||||| | |||||||| Sbjct 525340 AAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 525399 Query 193851 CATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTTC 193909 ||||| |||||| |||| | | |||| ||||| ||||||||| || | || Sbjct 525400 CATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 525458 Query 193910 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGC 193969 || ||| ||||||||||||||||||||||| | ||| ||||| || ||||| | Sbjct 525459 AAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 525518 Query 193970 TACTCAATTCTTGAATGAAAGAATGTTT 193997 | | || | || || |||||| | ||| Sbjct 525519 TGCAAAAATGTTAAAAGAAAGATTATTT 525546 Score = 102 bits (112), Expect = 1e-16 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 192929 GGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGA--TATT 192986 ||| ||| || ||||| |||| ||||||| |||||||| | ||| ||| | || | Sbjct 523995 GGATACATTAGCTCATTTATTATATTATCCTCAAAAACCATTAGTTTGTACAAAGGTAAT 524054 Query 192987 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 193046 | || ||||| ||||| || |||| ||||||||||| || || ||||| Sbjct 524055 GGAATATTTACGTT-TTAGA-GAGCTTCCAGCAGGTATTAATGCCATCGTCGCTATTATG 524112 Query 193047 TGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 193106 || ||||| |||||||| |||||||||||| | ||| | || || | |||||||| | Sbjct 524113 TGTTATACAGGTTATAACCAAGAAGACAGTTTGATTATGAACCAATCATCTATTGATCGT 524172 Query 193107 GGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGA 193150 || |||||| | | | || |||| ||| ||||| |||||| Sbjct 524173 GGTTTATTTAGAAGTGTATTTTATCGTACTTATACGAGTGAAGA 524216 >seq6 Length=3179732 Score = 114 bits (126), Expect = 2e-20 Identities = 255/382 (67%), Gaps = 18/382 (5%) Strand=Plus/Minus Query 163000 TAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACA 163059 |||||| || || ||| ||| ||| |||| ||||| | | ||| | || ||||| Sbjct 1293531 TAAGGTGGCACAGTTAGTTGGCTATATTGCAGAACATAGTGCATATCATCATGGTGAGTC 1293472 Query 163060 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 ||| |||| || || || | || ||| |||||| || | ||||||||| Sbjct 1293471 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1293412 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 163179 || | |||||| |||||||||||||| ||| |||||| ||||||||| | | || Sbjct 1293411 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1293352 Query 163180 ATCAAGATATATTTATACCAAA---CCAAATAAAATATTAAAATATATATTTAGAGAAGA 163236 | |||||||||| | ||| ||| ||| || | | |||||||| ||| | Sbjct 1293351 AGCAAGATATATATTTACAAAATTGGCAAGCTCAA---CCAGAAGTATATTTAATGAATA 1293295 Query 163237 AGATGACCCTATTTTAAATTAT---ACTGTTGAGGG---------TGAACCTGTTCATTT 163284 ||||| || || ||||| ||| | || || || |||||| ||| Sbjct 1293294 CGATGATCCCATATTAAAATATTTAAATGAAGAAGGACAGAAAATTGAACCACAATATTA 1293235 Query 163285 TATCCCAGTGATTCCATTAATTTTAATTAATGGTTCTATTGGTATTGGAACAGGATGGTC 163344 ||| |||||||||||| ||| ||| | ||||||| | |||||||| ||||||| || Sbjct 1293234 TATACCAGTGATTCCAACAATATTAGTAAATGGTTGTGAAGGTATTGGTACAGGATATTC 1293175 Query 163345 ATGTTTTATCCCTCAATATAAT 163366 | ||||| || | |||||| Sbjct 1293174 TTCATTTATACCGAATTATAAT 1293153 >seq5 Length=2641308 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 |||||||||||||||||||||| ||||||||||||||||||||||||||| || | | || Sbjct 1168335 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCTCAAACAGAAGAAG 1168276 Query 52048 CTACTGCTGAA 52058 || ||||||| Sbjct 1168275 CTCGTGCTGAA 1168265 >seq4 Length=1968205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 193758 TATTGTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTAT 193817 |||| ||| || |||||| || | |||| | || ||||| || |||| ||||||| Sbjct 223157 TATTCTGGATTAACTGGTGAACCCTTAGAAACCTATATATTTATGGGACCAATTTATTAT 223098 Query 193818 CATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGA-CAAGTGAC 193876 || | ||||||||||| | |||||||| ||||||||| | ||| |||| | Sbjct 223097 CAAAAATTAAAACATATGGTACAAGATAAAATCCATGCTAGAGCTAGAGGACCAAGACAA 223038 Query 193877 TACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGA 193936 | ||||| ||||||||| | ||| | || ||| |||||| | ||||| || || Sbjct 223037 TTACTTACA-AGACAACCAACTGAAGGTAGATCAAAAGAAGGAGGTCTCAGATTAGGTGA 222979 Query 193937 AATGGAGAAAGACTGTATTTTAGTTCATGGTGCTA 193971 |||||| | ||| ||| | ||| |||||| || Sbjct 222978 AATGGAAAGAGATTGTTTAATAGCATATGGTGTTA 222944 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 193444 TACCTGAAATAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGT-GGTAT 193501 |||||||| |||| ||||||||| ||||| || |||| | ||||||| |||| ||| | Sbjct 223456 TACCTGAACTAGGTGATAAATTTAGTTCAAGGCATGGAC-AAAAAGGTG-TTGTAGGTTT 223399 Query 193502 GATTTATTCA--CAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATT 193559 | ||| | | |||||||||||||||||||| | || || || |||||| | ||| Sbjct 223398 G--TTAGTAAATCAAGAAGATATGCCATTTACTGAATCGGGAATATGTCCAGATTTAATT 223341 Query 193560 ATTAATCCAAATTGTATTCCATCCAGAATGAC 193591 || |||||| || | | ||||| | ||||| Sbjct 223340 ATGAATCCACATGGATTCCCATCTCGTATGAC 223309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635171430837560