Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq9 107 3e-18 seq6 89.7 7e-13 >seq7 Length=700602 Score = 122 bits (134), Expect = 1e-22 Identities = 165/225 (73%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 201904 GAAAAAT-TCAAAGT--AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATA 201960 ||| ||| | ||||| ||||| ||||| || |||||||| ||||| | | ||||||| Sbjct 525323 GAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATA 525382 Query 201961 TGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAA 202019 ||||| | |||||||| ||||| |||||| || | | |||| | |||||| | ||| Sbjct 525383 TGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAA 525441 Query 202020 CCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT 202079 |||| || | || || |||||| |||||||||||||||||||||| ||||||| Sbjct 525442 CCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGT 525501 Query 202080 ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTT 202124 || | ||||| | || || | ||||| |||||| | ||| Sbjct 525502 ATGATATCACATGGATCTGCAAAAATGTTAAAAGAAAGATTATTT 525546 >seq9 Length=827030 Score = 107 bits (118), Expect = 3e-18 Identities = 442/676 (65%), Gaps = 42/676 (6%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 |||||||||||||| || ||| | ||| | | || ||||| ||| || ||| | | Sbjct 500421 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTTTTAAGAG 500477 Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473 ||| || ||||||| | ||| | || | ||| ||||||| |||| ||||||| Sbjct 500478 GAATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGTTGTTAA 500537 Query 180474 ATGATATTGGTGTTAAAG-TGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532 || | | || ||| | | ||| | | ||||||| | | | ||||||||| | | Sbjct 500538 ATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAGA 500593 Query 180533 GGATTTCATTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGA 180589 ||| |||| | ||||| | ||||||||||| |||||||| |||||||||||| Sbjct 500594 AAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGA 500650 Query 180590 CATGCAGGAGCTCAATATATTGA-CTGTGATACCAACTATATCGGGCAAGGTATAGACCA 180648 ||| || ||| |||||| | ||| || || ||| |||| | || || Sbjct 500651 CATTTCGGTGCTGAATATACAAATATGT-ATGATAATTATGAAAATAAAGGAGTGGATCA 500709 Query 180649 ATTAAGCCAAGTTATAGAAACT---ATAAAAAATAATCCCGAATGCCGAAGAATAATCAT 180705 ||||| || |||| || | || |||||| |||| | | ||||||| | | Sbjct 500710 ATTAA---AAAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTT 500766 Query 180706 AGATAGTTGGAATGTATCACA--ATTACCAGATATGGCTCTTCCACCATGTCACTGTTTG 180763 | ||||||||| | | | ||| | ||||| | || || ||||| ||| Sbjct 500767 GTGTGCATGGAATGTAAAAGATCTTGACC--AAATGGCATTACCTCCTTGTCATATTTTA 500824 Query 180764 GTACAATTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTG 180821 || ||||||| || || ||||| | ||| ||||||||||||| Sbjct 500825 TGTCAGTTTTATGTTTTCGATGGGAAATTATCATGTATT-----ATGTATCAAAGATCAT 500879 Query 180822 CAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-ATTTTTGGT-ATGTGT 180879 |||||||| |||| ||||| | ||||||||||| ||||| |||||| | || || Sbjct 500880 GTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGA 500939 Query 180880 TCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCA 180939 | | | |||| || ||||| |||| | || || ||| ||| || ||| || Sbjct 500940 TTGCAC-AAGT-CTGTAATTTGCAACCTGCGCAGTTCATACACGTTTTAGGAAATGCACA 500997 Query 180940 TGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCTTACAAGT 180998 ||| ||| ||| || ||||| |||||||||||| | | ||||| ||||| | | | Sbjct 500998 TGTTTATAATAATCACATTGATAGTTTAAAAATTCAACTTAACAGAATACCCTATCCA-T 501056 Query 180999 TTCCAAAAGTAAAATT 181014 | |||| | | ||||| Sbjct 501057 TCCCAACACTTAAATT 501072 >seq6 Length=3179732 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 |||||| || ||||| ||| || ||||||||||| | || ||| | |||||||| Sbjct 1293531 TAAGGTGGCACAGTTAGTTGGCTATATTGCAGAACATAGTGCATATCATCATGGTGAGTC 1293472 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | |||| || ||||| | || || |||||| || | ||||| |||| Sbjct 1293471 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1293412 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | ||||| |||||| ||||||| |||| ||||| ||||||||| || | || Sbjct 1293411 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1293352 Query 173068 ATCAAGGTATATTTATACTAAA 173089 | |||| ||||| | ||| ||| Sbjct 1293351 AGCAAGATATATATTTACAAAA 1293330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655273635593000