Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08]
777 sequences; 20,501,737 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq7 122 1e-22
seq9 107 3e-18
seq6 89.7 7e-13
>seq7
Length=700602
Score = 122 bits (134), Expect = 1e-22
Identities = 165/225 (73%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 201904 GAAAAAT-TCAAAGT--AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATA 201960
||| ||| | ||||| ||||| ||||| || |||||||| ||||| | | |||||||
Sbjct 525323 GAAGAATGTTAAAGTCCAAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATA 525382
Query 201961 TGGTTAAGGATAAAATGCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAA 202019
||||| | |||||||| ||||| |||||| || | | |||| | |||||| | |||
Sbjct 525383 TGGTTGAAGATAAAATACATGCAAGAAGTAGAGGACCATTAACTATGATTACA-AGACAA 525441
Query 202020 CCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGT 202079
|||| || | || || |||||| |||||||||||||||||||||| |||||||
Sbjct 525442 CCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGT 525501
Query 202080 ATTTTGGTTCATGGGGCCACACAATTTTTAAATGAAAGAATGTTT 202124
|| | ||||| | || || | ||||| |||||| | |||
Sbjct 525502 ATGATATCACATGGATCTGCAAAAATGTTAAAAGAAAGATTATTT 525546
>seq9
Length=827030
Score = 107 bits (118), Expect = 3e-18
Identities = 442/676 (65%), Gaps = 42/676 (6%)
Strand=Plus/Plus
Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416
|||||||||||||| || ||| | ||| | | || ||||| ||| || ||| | |
Sbjct 500421 AATTTGATTTAAGTCAAT--ATT-TCCCATTATTAACTACAAAGAAATTATTTTTAAGAG 500477
Query 180417 ATATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTAA 180473
||| || ||||||| | ||| | || | ||| ||||||| |||| |||||||
Sbjct 500478 GAATTATTGAAGAATTGCTTTGGTTTATTAGAGGAGAAACAAATGGTAATACGTTGTTAA 500537
Query 180474 ATGATATTGGTGTTAAAG-TGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532
|| | | || ||| | | ||| | | ||||||| | | | ||||||||| | |
Sbjct 500538 ATAAGAATG----TAAGGATATGGGAAGCTAATGGTACTAGGGAATTTTTAGATAATAGA 500593
Query 180533 GGATTTCATTTTCGAAAAGAAGGT---GATTTAGGACCAATTTATGGATTTCAATGGAGA 180589
||| |||| | ||||| | ||||||||||| |||||||| ||||||||||||
Sbjct 500594 AAATTA---TTTCATAGAGAAGTTAACGATTTAGGACCTATTTATGGTTTTCAATGGAGA 500650
Query 180590 CATGCAGGAGCTCAATATATTGA-CTGTGATACCAACTATATCGGGCAAGGTATAGACCA 180648
||| || ||| |||||| | ||| || || ||| |||| | || ||
Sbjct 500651 CATTTCGGTGCTGAATATACAAATATGT-ATGATAATTATGAAAATAAAGGAGTGGATCA 500709
Query 180649 ATTAAGCCAAGTTATAGAAACT---ATAAAAAATAATCCCGAATGCCGAAGAATAATCAT 180705
||||| || |||| || | || |||||| |||| | | ||||||| | |
Sbjct 500710 ATTAA---AAAATATAATAAATTTAATTAAAAATGATCCTACAAGTAGAAGAATTCTTTT 500766
Query 180706 AGATAGTTGGAATGTATCACA--ATTACCAGATATGGCTCTTCCACCATGTCACTGTTTG 180763
| ||||||||| | | | ||| | ||||| | || || ||||| |||
Sbjct 500767 GTGTGCATGGAATGTAAAAGATCTTGACC--AAATGGCATTACCTCCTTGTCATATTTTA 500824
Query 180764 GTACAATTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTG 180821
|| ||||||| || || ||||| | ||| |||||||||||||
Sbjct 500825 TGTCAGTTTTATGTTTTCGATGGGAAATTATCATGTATT-----ATGTATCAAAGATCAT 500879
Query 180822 CAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-ATTTTTGGT-ATGTGT 180879
|||||||| |||| ||||| | ||||||||||| ||||| |||||| | || ||
Sbjct 500880 GTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCTTATTCTATTTTTACTCATATGA 500939
Query 180880 TCTCTCAAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCA 180939
| | | |||| || ||||| |||| | || || ||| ||| || ||| ||
Sbjct 500940 TTGCAC-AAGT-CTGTAATTTGCAACCTGCGCAGTTCATACACGTTTTAGGAAATGCACA 500997
Query 180940 TGTATATTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCTTACAAGT 180998
||| ||| ||| || ||||| |||||||||||| | | ||||| ||||| | | |
Sbjct 500998 TGTTTATAATAATCACATTGATAGTTTAAAAATTCAACTTAACAGAATACCCTATCCA-T 501056
Query 180999 TTCCAAAAGTAAAATT 181014
| |||| | | |||||
Sbjct 501057 TCCCAACACTTAAATT 501072
>seq6
Length=3179732
Score = 89.7 bits (98), Expect = 7e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947
|||||| || ||||| ||| || ||||||||||| | || ||| | ||||||||
Sbjct 1293531 TAAGGTGGCACAGTTAGTTGGCTATATTGCAGAACATAGTGCATATCATCATGGTGAGTC 1293472
Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007
| | |||| || ||||| | || || |||||| || | ||||| ||||
Sbjct 1293471 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1293412
Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067
|| | ||||| |||||| ||||||| |||| ||||| ||||||||| || | ||
Sbjct 1293411 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1293352
Query 173068 ATCAAGGTATATTTATACTAAA 173089
| |||| ||||| | ||| |||
Sbjct 1293351 AGCAAGATATATATTTACAAAA 1293330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655273635593000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |