Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq5 96.9 4e-15 seq6 95.1 2e-14 >seq7 Length=700602 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 193344 AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATG 193403 ||||| ||||| || ||||| ||||| || | | ||||| |||||| | |||||||| Sbjct 525340 AAAATATTTATTGGACCAACATATTATCAAAGATTAAAACATATGGTTGAAGATAAAATA 525399 Query 193404 CATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTTC 193462 ||||| |||||| || | | | |||| ||||| ||||||||| || | || Sbjct 525400 CATGCAAGAAGTAGAGGACCATTAACTATGATTACAA-GACAACCAACAGAAGGAAGATC 525458 Query 193463 TCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGC 193522 || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| | Sbjct 525459 AAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCACATGGATC 525518 Query 193523 TACTCAATTCTTAAATGAAAGAATGTTT 193550 | | || | ||||| |||||| | ||| Sbjct 525519 TGCAAAAATGTTAAAAGAAAGATTATTT 525546 Score = 102 bits (112), Expect = 1e-16 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 192482 GGAAACAGTCTCTCATACATTAAATTATCCACAAAAACCACTTGTTACCACAGA--TATT 192539 ||| ||| | ||||| |||| ||||||| ||||||||| | ||| ||| | || | Sbjct 523995 GGATACATTAGCTCATTTATTATATTATCCTCAAAAACCATTAGTTTGTACAAAGGTAAT 524054 Query 192540 GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCT 192599 | || ||||| ||||| || |||| ||||||||||| || || ||||| Sbjct 524055 GGAATATTTACGTT-TTAGA-GAGCTTCCAGCAGGTATTAATGCCATCGTCGCTATTATG 524112 Query 192600 TGCTATACTGGCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGA 192659 || ||||| || |||||||||||||||||| | ||| | || || | |||||||| | Sbjct 524113 TGTTATACAGGTTATAACCAAGAAGACAGTTTGATTATGAACCAATCATCTATTGATCGT 524172 Query 192660 GGATTATTTGGCACTATAACTTATAATACATATACAGTTGAAGA 192703 || |||||| | | | || |||| ||| ||||| |||||| Sbjct 524173 GGTTTATTTAGAAGTGTATTTTATCGTACTTATACGAGTGAAGA 524216 >seq5 Length=2641308 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||||||||||||||| ||||||||||||||||||||||||||| || | | || Sbjct 1168335 CATATAATGCTGATTTTGATGGTGATGAAATGAATTTACATGTTCCTCAAACAGAAGAAG 1168276 Query 50498 CTACTGCTGAA 50508 || ||||||| Sbjct 1168275 CTCGTGCTGAA 1168265 >seq6 Length=3179732 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 ||| || || || ||| ||| ||| |||||||||| | | ||| | |||||||| Sbjct 1293531 TAAGGTGGCACAGTTAGTTGGCTATATTGCAGAACATAGTGCATATCATCATGGTGAGTC 1293472 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 ||| |||| || || || | || ||| |||||| || | ||||||||| Sbjct 1293471 TTCCTTACAACAAACGATTATAAATATGGCTCAAACTTTTGTCGGATCTAATAATATAAA 1293412 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 165341 || | |||||| |||||||||||||| ||| |||||| ||||||||| | | || Sbjct 1293411 CTTTTTAGAACCTTGTGGTCAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 1293352 Query 165342 ATCAAGATATATTTATACCAAA 165363 | |||||||||| | ||| ||| Sbjct 1293351 AGCAAGATATATATTTACAAAA 1293330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628525095390720