Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5 190 4e-43 seq4 159 7e-34 >seq5 Length=2641308 Score = 190 bits (210), Expect = 4e-43 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||| | ||||||||| || || ||||||||||| |||| | || || |||||| Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2485542 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||||||||||||| |||| |||||||||||| ||||| |||||||| ||||||||| Sbjct 2485543 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGA 2485602 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || ||||| || ||||| |||||||||||| || || || || | || || || || Sbjct 2485603 ATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTT 2485662 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || |||||||| || |||||| Sbjct 2485663 CCAGTTAATGTTTTTACAAAAATTTGCATT 2485692 >seq4 Length=1968205 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | |||||||| | |||||||| || || || |||||||| | Sbjct 458832 TACCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTG 458773 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | |||| || ||||||| ||||||||| ||||| |||| ||||||||| || || | Sbjct 458772 ATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTG 458713 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| ||||| || ||||| ||||| || ||| || || | Sbjct 458712 GAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGA 458653 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 | || | ||||| || || ||| Sbjct 458652 CGTCAAGGGTTATAGTTTTTCCT 458630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981817425603403