Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5 100 5e-16 seq4 86.0 1e-11 >seq5 Length=2641308 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA--------- 81696 |||| ||||||| || ||||||||||| |||| || || | |||||||| Sbjct 2485494 AGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTGTTTTCC 2485553 Query 81697 --CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 |||| |||| |||||||||| | ||| | ||| |||| ||||||||||| ||||| || Sbjct 2485554 AGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCCTT 2485613 Query 81755 TATATTTTCAATCGTAT 81771 | ||| |||||||||| Sbjct 2485614 AACATTCTCAATCGTAT 2485630 >seq4 Length=1968205 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/134 (73%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA---------- 81696 ||| ||||||| || || |||||||| |||| |||||| | |||||||| Sbjct 458800 GTAGATTCCTTTTGAATGTTATAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCT 458741 Query 81697 -CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| |||| ||||||||| | || | ||| |||| ||||||||||| ||||| || Sbjct 458740 GCAAATATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGAATTTTTGCCTTA 458681 Query 81756 ATATTTTCAATCGT 81769 | ||| ||||| || Sbjct 458680 ACATTCTCAATGGT 458667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903402425618720