Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 279 1e-69 seq9 113 1e-19 seq5 107 5e-18 seq8 104 6e-17 seq13 91.5 3e-13 >seq6 Length=3179732 Score = 279 bits (308), Expect = 1e-69 Identities = 616/914 (67%), Gaps = 31/914 (3%) Strand=Plus/Minus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || ||||||||| | || | | || ||| |||||||| || ||||| Sbjct 1471346 TAAATAAAGAAATAGATTATACTAGGGATTTTAATTATGATTATTTTGGATTTAAAACGT 1471287 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||| | |||||||| | ||| | ||| | || |||||| | |||||||| | | Sbjct 1471286 TGGAAAGATCTTATTTATTACGTATTAATAATAAAATTATTGAAAGACCTCAACATTTAT 1471227 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATAT---TAAAGCTGTTATTGAATGTT 110439 | | | ||| | |||||||| ||| | |||| || ||||||| ||| ||| | Sbjct 1471226 TAATGAGAGTTTCTATTGGTATACATATAGATGACATAGATAAAGCT-TTA--GAAACAT 1471170 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | | || | || ||||| |||||||| | ||||| |||||| Sbjct 1471169 ATCATTTAATGTCTCAGAAATATTTTACCCATGCAACTCCTACATTGTTTAATTCAGGAA 1471110 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCTTCT-AGGAATTAACGATGATTCTATTGAA 110558 | || |||| || ||||||| |||||| | | ||| || | |||||||||||| Sbjct 1471109 CCCCAAGACCACAAATGTCTTCTTG-TTTCTTGTTATCAATGAAAGCAGATTCTATTGAA 1471051 Query 110559 GGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT 110618 ||||||| ||| | || ||| || |||| | ||| ||||| | ||||| |||||| Sbjct 1471050 GGTATTTTTGAAACGCTAAAACAATGTGCTTTAATTAGTAAAACTGCAGGAGGTATTGGT 1470991 Query 110619 ATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA----ACAG---CGAAGGG 110671 | || || ||||| || |||| ||| || | | || | || || Sbjct 1470990 GTAGCAGTACAAGATAT------AAGAGGACAGAAT-TCTTATATTAGAGGTACCAATGG 1470938 Query 110672 TGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAA 110731 || | ||| | || || ||||||||||| || || || ||||||| |||||| | Sbjct 1470937 AATATCTAATGGTTTAGTACCTATGTTAAGAGTTTTTAATGATACTGCAAGATATGTAGA 1470878 Query 110732 TCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGA 110788 ||||||||| || | || || || |||||| | ||| | ||||| ||||||||||| Sbjct 1470877 TCAAGGTGGAGGAAAACGTAAGGGATCGTTTGCTGTTTATATTGAACCATGGCATTCAGA 1470818 Query 110789 TATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGA 110848 |||||||||||| ||||| | | || || || ||| |||||| ||||||||| || Sbjct 1470817 TATATTTGAATTTTTAGATTTAAGAAAGAACCATGGAAAAGAAGAATTAAGAGCACGAGA 1470758 Query 110849 TTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCAT 110908 |||||||||||| | ||| || | ||| | || ||||| | ||| |||||||| | Sbjct 1470757 TTTATTTTATGCTGTATGGGTTCCTGATCTTTTTATGAAGAGAGTTAAAGAAAATAAAAA 1470698 Query 110909 GTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTT 110968 ||| | | |||||||| || | ||| ||| || ||| | || |||| || Sbjct 1470697 TTGGACATTAATGTGTCCAAATGAATGTCCAGGTTTAAGTGAAACTTGGGGTGAAGAATT 1470638 Query 110969 TGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGC 111025 |||| | | || ||||||||| ||||| || | | ||| ||| ||| || Sbjct 1470637 TGAAAAATTATATACTAAATATGAAGAAGAA---AATATGGGAAAAAAAACAGTTCTTGC 1470581 Query 111026 TCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTT 111085 |||||| | ||||| || | || ||| | ||||| ||| || ||||| | Sbjct 1470580 TCAAGATTTATGGTTTGCTATATTACAAAGCCAAATAGAAACAGGAGTACCATATATGCT 1470521 Query 111086 GTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAG 111145 ||||||||| | |||| ||||| ||||| | ||||| || || ||||| | ||| Sbjct 1470520 ATATAAAGATTCTTGTAATGCAAAATCCAATCAGAAAAATTTGGGTACTATTAAATGTAG 1470461 Query 111146 TAATTTGTGCTGTG 111159 ||| || || |||| Sbjct 1470460 TAACTTATGTTGTG 1470447 Score = 192 bits (212), Expect = 1e-43 Identities = 579/880 (66%), Gaps = 23/880 (3%) Strand=Plus/Minus Query 131407 AAATAAACAAATTAAACGTTACACCCTATTTCCAATTAAACATCACGATGTTTTCGATAT 131466 ||||||| | | | | || | || ||| |||||| | ||| ||||||| ||| | Sbjct 150792 AAATAAAGAGAGTGATCGATTTACTTTATATCCAATATTATATCCTGATGTTTGGGATTT 150733 Query 131467 GTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATAT 131526 || |||||| ||| || | || ||||| | ||||| || ||| | | | ||| | Sbjct 150732 TTACAAGAAAGCTGAAGCTTCTTTTTGGACAGCAGAAGAAATTGATTTATCTAGTGATTT 150673 Query 131527 TGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATT 131586 | |||| || ||||| | ||||| ||| ||||| | | || | ||||| Sbjct 150672 AAAAGATTTTGAGAAATTGAATGAAAATGAGAAACATTTTATAAAGCATGTGTTAGCATT 150613 Query 131587 CTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAA- 131645 || || | ||||||||| || || | |||||| | | || ||| || || |||| | Sbjct 150612 TTTTGCAGCAAGTGATGGTATAGTATTAGAAAATTTGGCTAGTAAGTT--TTTAAGAGAG 150555 Query 131646 -TTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCAT 131704 || | || | |||| | | || || | |||||| ||||| ||| ||||||| Sbjct 150554 GTTCAAATAACGGAAGCTAAAAAATTTTATTCCTTTCAAATAGCTGTAGAAAATATTCAT 150495 Query 131705 AGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAA 131764 || | ||| ||||| ||||| | | | ||||| ||||| | || || | |||| Sbjct 150494 TCAGAAACATATAGTTTATTAATTGATAATTATATTAAAGATGAAAAAGA-AAGATTAAA 150436 Query 131765 TT-ATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAA 131823 || |||| ||||| || | || | ||||| | ||||| |||||| |||||| || Sbjct 150435 TTTATTTCATGCTATAGAAAATATCCCTGCCGTAAAAAATAAAGCATTATGGGCAGCAAA 150376 Query 131824 ATGGATTCAAGATGATTCCGCTAATT---TTTCTACAAGACTTGTAGCTTTTGCTTGTGT 131880 ||||||| | ||| |||||| || || |||| |||| ||| ||| ||||| Sbjct 150375 ATGGATTAATGATA------CTAATTCGTTTGCTGAAAGAATTGTTGCTAATGCATGTGT 150322 Query 131881 TGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATT 131940 |||||| ||||| || ||| ||| ||||| || |||||| ||||||| | || Sbjct 150321 TGAAGGAATATTATTCAGTGGTAGTTTTTGTGCAATTTTTTGGTTTAAGAAAC-AAAATA 150263 Query 131941 GA-TGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999 | | | || | |||| ||| |||| ||| |||||||||| ||| ||||| | Sbjct 150262 AATTACACGGTTTGACATTTAGTAATGAATTAATCAGTAGAGATGAAGGATTACATACAG 150203 Query 132000 AATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGA--AAATAATATTAA 132057 | ||| | ||||| ||||| ||| | | |||||||| || |||| || || Sbjct 150202 ATTTTAATTGCTTAATTTATAGTTTATTAGATAATAAACTTCCAGAACAAATGGTACAAA 150143 Query 132058 ACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTG 132117 | | | | ||| ||||| || || | || | ||||| ||| | || || || Sbjct 150142 ATATCGT-TAA-AGAAGCTGTAGAAGTTGAAAGATCTTTTATATGTGAATCCTTACCATG 150085 Query 132118 CAATTTGATTGGGATGAATGCT-GACTCTATGAAGGAGTACATTGAATTCGTTGCTGATC 132176 |||| || || |||||| || |||| |||| | || || ||||| ||||||||| Sbjct 150084 TGATTTAATAGGAATGAATTCTAGACT-TATGTCTCAATATATAGAATTTGTTGCTGATA 150026 Query 132177 GTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGGA 132236 | ||| | | | |||| || || |||| | || |||| || | || |||| Sbjct 150025 GATTATTAGAATGTTTAGGATGCTCTAAAATTTTCCATTCCAAAAATCCATTTAATTGGA 149966 Query 132237 TGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 |||| | |||||| ||| |||| ||||| ||||| || || Sbjct 149965 TGGACTTAATTTCACTTCAAGGAAAAACAAACTTTTTTGA 149926 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| |||||||| | || || |||||||||| || | || |||||| | || Sbjct 1470327 ACCAAAATTATTACAAGAAATTTAGATAAAATTATAGAAAGAAATTATTATCCAGTCAAA 1470268 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||||||| ||||||| | ||||| || ||||| ||||| || ||||||||||| Sbjct 1470267 GAAGCAAAAACATCTAATACTAGACATAGGCCTATTGGTATTGGTGTTCAAGGATTAGCA 1470208 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| ||| ||| || ||| || Sbjct 1470207 GATACATTTATGTTATTAAGATATCCATATGAATCTGATGCTGCAAAAGAATTGAATAAA 1470148 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || ||||| || |||| |||||| Sbjct 1470147 AGAATATTTGAAACTATGTATTATGCTGCT 1470118 Score = 98.7 bits (108), Expect = 2e-15 Identities = 340/516 (66%), Gaps = 32/516 (6%) Strand=Plus/Minus Query 279057 AATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTC-GTAAATCTCAA 279115 ||||||| || || || ||| | || ||||| || ||||| || ||| | |||| Sbjct 1294413 AATTATA-GGAATACCTAAATTAGAAGATGCTAATGATGCTGGTAGTAAGTATAG-TCAA 1294356 Query 279116 GAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATT-TGCGATTGCTGGTTT 279174 |||||| | || |||| || || |||||| |||| || | ||| | ||||| || Sbjct 1294355 GAATGTACACTAATTCTAACAGAAGGAGATAGTGCTAAAACTTCCTGCT-TAGCTGGATT 1294297 Query 279175 ATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGC 279234 |||| || | ||| | ||||||||||| || || || ||| ||| ||| || | |||| Sbjct 1294296 ATCTATTGTAGGTAGAGATAAATATGGAGTTTTCCCACTAAAAGGGAAATTATTAAATGT 1294237 Query 279235 TCGTGATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGAT 279294 | ||| | || |||||| ||| | | | |||| ||| | Sbjct 1294236 AAGAGAT--------------GCCTCATTTAAA-CAACTTATGGATAATAAAGAAATTCA 1294192 Query 279295 TAAT-TTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGAT-ACATCAA-- 279350 ||| || | || ||| ||| ||||| | | ||| | |||||| | || || Sbjct 1294191 AAATATTTTTAGAATTAT-GGGTTTAGATATTACTGATAAAAATAAAGATGATATTAAAG 1294133 Query 279351 GTTTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTA 279410 | ||| ||||||| | || ||| ||||||| ||||||| ||||| || |||| Sbjct 1294132 GATTAAGATATGGATCTTTAATGATTATGACAGATCAAGATTATGATGGTTCACATATTA 1294073 Query 279411 AAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAATCAAAA---TT 279467 |||||||| | ||||| | | ||| || |||||| || || || || || || Sbjct 1294072 AAGGATTACTTATTAATATGATACATAAATTTTGGCCAAGCTTATTAAAACATAAAGGTT 1294013 Query 279468 TTGTAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTAT 279527 || | |||| ||| |||||||||| |||||| | ||||| | ||||| | | | Sbjct 1294012 TTCTTAGTGAATTTGTAACACCAATTGTTAAGGTACAAAAAGGAAGCCAAGAA-TATTCT 1293954 Query 279528 TTTATT--CATTGCAGAAGTTTGAACAATGGAAAGA 279561 ||| || ||| || ||| | ||||||||||||||| Sbjct 1293953 TTTTTTACCATAGCTGAA-TATGAACAATGGAAAGA 1293919 >seq9 Length=827030 Score = 113 bits (124), Expect = 1e-19 Identities = 159/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||| ||||||||||||||||||||||| | |||||||| |||| ||| ||||| Sbjct 500838 ACATAAAACTGACATAAAATATGACAAGGAGGTAATGCCATTTGGTCAAGATCTTTTACA 500779 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAA-TAAGTTCTTCACA 59055 |||||||||| |||| ||| | | | ||| |||||||||| ||| || | | Sbjct 500778 TTCCATGCACACAAAAGAATTCTTCTACTTGTAGGATCATTTTTAATTAAATTTATTA-T 500720 Query 59056 ATGTTTTATTTGGTCAAATCCATTAGTATATTCAGTATTGGCAT-CA-----ATGTATTT 59109 || ||||| ||| || | ||| | ||| |||| ||| ||| || | |||| Sbjct 500719 ATTTTTTAATTGATCCACTCCTT---TATTTTCATAATTATCATACATATTTGTATATTC 500663 Query 59110 ATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCC 59148 | | || ||| | ||||||||||||||| | |||||| Sbjct 500662 AGCACCGAAATGTCTCCATTGAAAACCATAAATAGGTCC 500624 >seq5 Length=2641308 Score = 107 bits (118), Expect = 5e-18 Identities = 122/163 (75%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| |||||||| | ||| |||||||| ||| |||||||| ||| Sbjct 1168441 GTTTTATTTAATAGACAACCATCTTTACATCGTATGTCTATTATGTGTCATAAAGCAAAA 1168382 Query 305390 GTATTATCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 || | ||||| || ||||| || |||| | ||| |||| | || |||||||| Sbjct 1168381 ATAAT----GGATTTTAAAACTTTTCGTTTTAATGAATGTGTTTGTTCCCCATATAATGC 1168326 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||| |||||||||||| | ||||| |||||| || Sbjct 1168325 TGATTTTGATGGTGATGAAATGAATTTACATGTTCCTCAAACA 1168283 >seq8 Length=883952 Score = 104 bits (114), Expect = 6e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| || | |||| || | || ||||| || || ||| | ||||||||| Sbjct 633631 AGACATATGACAGATGAAGATTATATTTTATTTAATAGACAGCCTTCATTACATAAAATG 633690 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--A 305423 ||| |||| |||||| | ||| ||||| | | |||||||| |||||| || | Sbjct 633691 AGTATTATGGGTCATAAGGCTAAAATATTACCATATTCAACATTTCGTTTAAATTTATCA 633750 Query 305424 GTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || ||| | || ||||||||||||||||||||||| |||||||| | ||| || || Sbjct 633751 GTCACTT---CACCGTATAATGCGGATTTTGATGGAGACGAAATGAACTTACATTTAGCT 633807 Query 305483 CAATCAAAGGTTACAATGACTGAA 305506 || ||| | | |||| ||||| Sbjct 633808 CAGTCACATGAAACAAGATCTGAA 633831 >seq13 Length=1076939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 72292 TTTAATAAGAAA-TTCTCATCTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCC 72350 ||||||| ||| || ||||| |||||| |||||||||||||||| || | || || Sbjct 169219 TTTAATATCAAAATTTTCATCATCAAAATGTTCTCCATATATACTTATACATCCACTACC 169160 Query 72351 ATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACTCTATGGAA 72407 || | |||| |||| ||| || ||||||| |||||||| || ||||| ||||| || Sbjct 169159 ATTATAGTTAACAAAATCTCCACCTTGAATCATAAAATCTTTTATTACCCTATGAAA 169103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800984907697