Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq5 113 4e-20 seq4 98.7 9e-16 >seq6 Length=3179732 Score = 116 bits (128), Expect = 3e-21 Identities = 274/405 (68%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 137025 ATTACTAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGT 137084 ||||||||| | || || || ||||| ||||| || | ||| |||| ||| | || || Sbjct 1469863 ATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGT 1469922 Query 137085 CGGCATGTAAGCGATCAACAATGAATTCCGTAAACCGTGT--ACGGCCAATTGTTGCTTG 137142 ||||| || | || ||||| || | |||||| ||| |||| ||| | |||| Sbjct 1469923 TGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGG---ATTTTAGCTTT 1469979 Query 137143 -AGCTCTTTCCAGTTCCACAGATTGTT--CGATTGGGTTAT-ATTCCACAAATCAAACTG 137198 | || | ||| | ||| ||||| | | | ||| |||||||| |||||| || Sbjct 1469980 TAATTCATCCCAATCCCAATATTTGTTATCAACT---TTAGCATTCCACATATCAAATTG 1470036 Query 137199 CAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGC 137258 || | || | ||||| |||||| || |||||| ||||||| ||| || | | || Sbjct 1470037 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1470096 Query 137259 CAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAA 137318 || ||||| | | ||| || |||| || |||||||| | ||| || ||||||| Sbjct 1470097 CAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAA 1470156 Query 137319 TTCTCTAGCTTCTTGGCTGTCGTAGGGCATATC-CAATATAGCGAAAGCATCTGCAAGTC 137377 |||| | || | | || || || ||||| |||| || | |||||| | || Sbjct 1470157 TTCTTTTGCAGCATCAGATTCATATGG-ATATCTTAATAACATAAATGTATCTGCTAATC 1470215 Query 137378 CTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTT 137422 |||||| ||| ||||| ||||| || ||| || ||| ||| ||| Sbjct 1470216 CTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTT 1470260 >seq5 Length=2641308 Score = 113 bits (124), Expect = 4e-20 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 || || || |||||| | ||||||||||||||||| |||||| | || || | || || Sbjct 2485700 TTTAAGAAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTT 2485641 Query 25226 GAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACC 25284 || |||| | ||||| || ||| | || || ||||||| |||||||| || || || Sbjct 2485640 GA-GCCATCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCC 2485582 Query 25285 GCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTC 25342 || ||||| |||||| | || | | || |||||| | ||||||| || | | || Sbjct 2485581 TCCTGATCAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATC 2485522 Query 25343 AGCGATTACAATATTCAAAAAGAATCCAC 25371 || |||| ||||||||||| ||||| || Sbjct 2485521 AG--ATTATAATATTCAAAAGGAATCTAC 2485495 >seq4 Length=1968205 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | || || | || ||||| |||| | || || || ||| | || || ||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGA-GCCATCTGACACCATTGAGAATGTTAAGGCAAA 458689 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| || || || || || || |||||| | || | | || ||||| Sbjct 458690 AATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACA 458749 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | | ||||||| |||| | | ||||| || |||||||| ||||| || | || || Sbjct 458750 ATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACACTT 458809 Query 25381 AGTGTTAAGATTGAGAGGAGG 25401 |||||||||||| ||||| || Sbjct 458810 AGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090077020640