Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq4 93.3 3e-14 >seq5 Length=2641308 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 ||||||||||||||||| |||||||| ||||| || ||||||||| | || || || Sbjct 2485694 AAAATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCA 2485635 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | ||| | || || ||||||| || |||||||| | || |||| Sbjct 2485634 TCTGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 2485575 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| | || | ||| || ||||||||||||||| | || | ||||| Sbjct 2485574 CAACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTAT 2485515 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| |||||||| |||| || ||| Sbjct 2485514 AATATTCAAAAGGAATCTACTTTACACTTGGTA 2485482 >seq4 Length=1968205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 106343 AAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAA 106402 ||||||| || |||||||| | || ||| |||||||| | || | ||| || || Sbjct 458687 AAAAATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAA 458746 Query 106403 ACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACA 106462 ||||||||||||| | |||| | ||||| ||||| ||||| ||||||||| |||| Sbjct 458747 ACAATTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTACATTACA 458806 Query 106463 TTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||| |||| || Sbjct 458807 CTTAGTGTTAAGATTAAGAGGTGG 458830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402325790064416