Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08]
777 sequences; 20,501,737 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq5 104 2e-17
seq4 86.0 6e-12
>seq5
Length=2641308
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||||| || |||||||||||||| || || || | ||| || || | ||
Sbjct 2485488 GTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCTAATTG 2485547
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||| || ||||| || || | || ||||| || || || |||||||| |||||||||||
Sbjct 2485548 TTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 2485607
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
| || || || | || || || | || || || || ||||||||||| || ||
Sbjct 2485608 TGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTTTCCAGT 2485667
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTGTT 134719
||| ||||| || |||||||||||||| ||
Sbjct 2485668 TAATGTTTTTACAAAAATTTGCATTTTCTT 2485697
>seq4
Length=1968205
Score = 86.0 bits (94), Expect = 6e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| ||||| | || ||||| | ||||| || ||||||||||||||||| || || |
Sbjct 458830 CCACCTCTTAATCTTAACACTAAGTGTAATGTAGATTCCTTTTGAATGTTATAATCTGAT 458771
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | | || || | ||||| |||||||| || || | || || || || ||
Sbjct 458770 AAAGTTCTTCCA-TCTTCTAATTGTTTTCCTGCAAATATTAATCTTTGTTGGTCAGGTGG 458712
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| |||||||| |||||||||||| || || || | ||||| || | || ||
Sbjct 458711 AATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGTGTCAGATGGCTCGAC 458652
Query 134666 GTCGAGAGTAATGGTTTTACC 134686
||| || || || ||||| ||
Sbjct 458651 GTCAAGGGTTATAGTTTTTCC 458631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505393491318040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |