Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 520 1e-142 >seq6 Length=3179732 Score = 520 bits (576), Expect = 1e-142 Identities = 1150/1706 (67%), Gaps = 54/1706 (3%) Strand=Plus/Plus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| |||||| || || ||||| ||||| | |||||| ||||||| ||||||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG---CTCGTATTTTGAATGGAT 68631 || | ||| || | | || ||| | |||||||| | || ||| |||||| | Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACTT 1469740 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 ||| | | ||| | | | || || || |||| ||| || ||| || |||| Sbjct 1469741 CCATTGTGAGCTATTAATTGCTGTTTCATGTCTTCATCCCATAAACCTCTGTCAAATAAA 1469800 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 || | | | ||| |||||||| | |||||| ||| ||| ||||| | | ||| Sbjct 1469801 TCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATAATAA 1469860 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 |||||||| ||||||||||| | |||||||| ||||| |||||||| | ||| |||||| Sbjct 1469861 ATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCA 1469920 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871 |||||||||||||| | ||||| ||||| | ||||||| | ||||||| ||||| Sbjct 1469921 GTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTT 1469980 Query 68872 AGATGTTTCCAATCCCAAAGATCAGATGGTA-CAAC------ATTCCAAAGATCGTATTG 68924 | | | |||||||||| | || || |||| |||||| | ||| |||| Sbjct 1469981 AATTCATCCCAATCCCAATATT----TGTTATCAACTTTAGCATTCCACATATCAAATTG 1470036 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 || || || | ||||| ||| | ||| | |||||| ||||| | | ||| Sbjct 1470037 TAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGC 1470096 Query 68985 TAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTG 69042 | |||| || || | ||||| ||| | ||||| || ||||| || || | ||||| Sbjct 1470097 CAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTC 1470154 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 | |||| ||| | | || ||||||| ||| | ||||||| |||||| ||| Sbjct 1470155 AATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAAT 1470214 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 || ||||| |||||||| ||||| |||||||| |||| || ||| |||||| | Sbjct 1470215 CCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACT 1470274 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACTTTAACCACGT 69220 ||||||||||| | ||||||||||||| | ||||| | | || | ||| | | Sbjct 1470275 GGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAAT--TTTGGTAATTT 1470332 Query 69221 CCTTTAGTTTGAGAAAATCAAATCGT-------CCATCTATAACAAACATATTCAGTGCT 69273 | | || || ||||| ||| | ||| | || |||| || | ||| Sbjct 1470333 CATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTA-CAAATTTACATAAAGCT 1470391 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | |||||| | |||||| || || || |||| || | | ||||| || || || | Sbjct 1470392 ATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAA 1470451 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 |||| ||||||||||| ||||| |||| ||||| |||||| ||| ||||| | Sbjct 1470452 CATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATTACAAGAA 1470511 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAA 69453 || || || || ||| | || || ||||| || || || | |||| ||| Sbjct 1470512 TCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 1470571 Query 69454 ACGACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATAT 69510 | | |||| | || || || | | | || |||| |||||||| |||||| Sbjct 1470572 AAATCTTGAGCA---AGAACTGTTTTTTTTCCCATATTTTCTTCTTCATATTTAGTATAT 1470628 Query 69511 AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATC 69570 | ||| ||||| || |||||| ||| || || |||||||||||||||||||| Sbjct 1470629 AATTTTTCAAATTCTTCACCCCAAGTTTCACTTAAACCTGGACATTCATTTGGACACATT 1470688 Query 69571 AATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCT 69630 |||| ||| | || || ||||||| |||||||| ||||| |||| ||| | ||| Sbjct 1470689 AATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAACCCATACAGCA 1470748 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAA 69689 ||| | ||||| | ||| |||||| ||||| || | ||| |||| ||| | ||| Sbjct 1470749 TAAAATAAATCTCGTGCTCTTAATTCTTCTTTTCCATGGTTCTTTCTTAA-ATCTAAAAA 1470807 Query 69690 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATT 69749 || | ||||| |||||||||||||| | ||| | || | |||| ||||| Sbjct 1470808 TTCAAATATATCTGAATGCCATGGTTCAATATAAACAGCAAACGATCCCTTACGTTTTCC 1470867 Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| ||||| ||||| | |||| | ||||| | ||| || | | ||| Sbjct 1470868 TCCACCTTGATCTACATATCTTGCAGTATCATTAAAAACTCTTAACATAGGTACTAAACC 1470927 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAA-----CT-TCCTCTTGCGCGAATAT-TAC 69862 ||||||| | ||||| || || ||||||| || ||||||| |||| | Sbjct 1470928 ATTAGATATTCCATTGGTACCTCTAATATAAGAATTCTGTCCTCTT------ATATCTTG 1470981 Query 69863 TAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGT 69922 || | | || ||| || |||||||| ||||| |||| |||||| |||| | || | Sbjct 1470982 TACT-GCTACACCAATACCTCCTGCAGTTTTACTAATTAAAGCACATTGTTTTAGCGTTT 1471040 Query 69923 CATATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGA 69981 || | ||||| || || ||| || ||| || ||| ||| ||||| ||||||||| Sbjct 1471041 CAAAAATACCTTCAATAGAATCTGCTTTCATTGATAACAAG-AAACAAGAAGACATTTGT 1471099 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 | | ||||| | |||||| |||||||||| ||| || || || |||| | ||| Sbjct 1471100 GGTCTTGGGGTTCCTGAATTAAACAATGTAGGAGTTGCATGGGTAAAATATTTCTGAGAC 1471159 Query 70042 AGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACA 70101 | | || |||||||| | |||| ||||| || ||| || || || | || Sbjct 1471160 ATTAAATGATATGTTTCTAAAGCTTTATCTATGTCATCTATATGTATACCAATAGAAACT 1471219 Query 70102 CGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGAT 70161 | ||| || | ||| ||||||| ||| | |||||||||| || || | || ||| Sbjct 1471220 CTCATTAATAAATGTTGAGGTCTTTCAATAATTTTATTATTAATACGTAATAAATAAGAT 1471279 Query 70162 TTTTCCAGAGTTTTAAACCCAAAATA 70187 |||||| |||||||| |||||||| Sbjct 1471280 CTTTCCAACGTTTTAAATCCAAAATA 1471305 Score = 262 bits (290), Expect = 5e-65 Identities = 613/913 (67%), Gaps = 34/913 (4%) Strand=Plus/Plus Query 39307 TTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTT 39366 ||||| ||| ||||| |||||| || || | || | |||||| ||||| || ||||| Sbjct 149883 TTGTGCCATGACTCCTGATTTTTGATAATCTGCGACTCTTTTCTCAAAAAAGTTTGTTTT 149942 Query 39367 GCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAttttttttt 39426 |||| | ||| || ||||| ||| ||| ||||| | | || | |||| Sbjct 149943 TCCTTGAAGTGAAATTAAGTCCATCCAATTAAATGGATTTTTGGAATGGAAAATTTTAGA 150002 Query 39427 AAATCCTAA---TTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT 39483 ||||||| |||| ||| |||||||| |||||||||||||| ||| ||| | Sbjct 150003 GCATCCTAAACATTCT--AAT-AATCTATCAGCAACAAATTCTATATATTGAGACATAAG 150059 Query 39484 TTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGAT 39543 | | ||||||||||||| | | | ||||| | || || ||| | |||| | Sbjct 150060 TCTAGAATTCATTCCTATTAAATCACATGGTAAGGATTCACATATAAAAGATCTTTCAAC 150119 Query 39544 GTCTACGGCCTCTGTTATTATCGATGTTAC-TACCTCATCACTCGGTGG------ATGCA 39596 ||||| || ||| ||| |||| || |||| | || | || | Sbjct 150120 TTCTACAGCTTCT----TTAACGATATTTTGTACCATTTGTTCTGGAAGTTTATTATCTA 150175 Query 39597 ATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTA 39656 ||||| || | |||||||| || || ||||| || ||||||||||| |||| Sbjct 150176 ATAAAC---TATAAATTAAGCAATTAAAATCTGTATGTAATCCTTCATCTCTACTGATTA 150232 Query 39657 ATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAG 39716 |||| ||| |||||| | || | | | | | || || | |||||| || ||| Sbjct 150233 ATTCATTACTAAATGTCAAACCGTGTAATTTATTTTGTTTCTTAAACCAAAAAATTGCAC 150292 Query 39717 CAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT 39776 |||| ||| || || || ||||| || |||| ||||||| ||| || | Sbjct 150293 AAAAACTACCACTGAATAATATTCCTTCAACACATGCATTAGCAACAATTCTTTCAGCAA 150352 Query 39777 A---ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | | | ||||||||| ||||| || |||||| ||||| || ||||| || Sbjct 150353 ACGAATTAGTATCATTA---ATCCATTTTGCTGCCCATAATGCTTTATTTTTTACGGCAG 150409 Query 39834 GCATTGTTTCTATAGCATTAAAGAGA--TAATGTTT-TTCATCACTATCTTTAACATATG 39890 | || |||||||||||| ||| | | |||| ||| || || |||||||| ||| Sbjct 150410 GGATATTTTCTATAGCATGAAATAAATTTAATCTTTCTTTTTC---ATCTTTAATATAAT 150466 Query 39891 TATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGT 39950 |||| ||||| | |||||| |||||||||| || ||||| | || || ||||| | Sbjct 150467 TATCAATTAATAAACTATATGTTTCTGAATGAATATTTTCTACAGCTATTTGAAAGGAAT 150526 Query 39951 AAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC-CGCCAAATTTTCA 40009 |||| | | ||||| || ||||| |||||| |||| ||| | ||||||||||| Sbjct 150527 AAAATTTTTTAGCTTCCGTTATTTGAACCTCT-CTTAAAAACTTACTAGCCAAATTTTCT 150585 Query 40010 TTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCA 40069 ||||| |||||||| || ||||||||||| || ||||| || ||||||| ||| ||| Sbjct 150586 AATACTATACCATCACTTGCTGCAAAAAATGCTAACACATGCTTTATAAAATGTTTCTCA 150645 Query 40070 TCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 40129 | ||||||| | | || || | ||| | |||| ||| | |||||| |||||| Sbjct 150646 TTTTCATTCAATTTCTCAAAATCTTTTAAATCACTAGATAAATCAATTTCTTCTGCTGTC 150705 Query 40130 CAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAA 40189 ||||| || || || || || ||||| | | ||| | |||| ||||| ||||||| | Sbjct 150706 CAAAAAGAAGCTTCAGCTTTCTTGTAAAAATCCCAAACATCAGGATATAATATTGGATAT 150765 Query 40190 ATAACAAATCTAT 40202 | | ||||| || Sbjct 150766 AAAGTAAATCGAT 150778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902128398280