Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 226 2e-54 seq9 185 7e-42 seq8 116 3e-21 >seq6 Length=3179732 Score = 226 bits (250), Expect = 2e-54 Identities = 593/880 (67%), Gaps = 41/880 (5%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 |||||| ||||| ||| | ||| | | ||||| ||||| | || || |||||||| Sbjct 150762 TCCAATATTATATCCTGATGTTTGGGATTTTTACAAGAAAGCTGAAGCTTCTTTTTGGAC 150703 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACA 43827 |||||||||| ||||||| ||| || ||| | ||| ||| ||| || | | Sbjct 150702 AGCAGAAGAAATTGATTTATCTAGTGATTTAAAAGATT---TTGAGAAATTGAATGAAAA 150646 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 || |||||||||||| || || || |||||||| || || || || ||||| Sbjct 150645 TGAGAAACATTTTATAAAGCATGTGTTAGCATTTTTTGCAGCAAGTGATGGTATAGTATT 150586 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||||||| |||| |||| ||| |||||| || | ||||| | ||||| Sbjct 150585 AGAAAATTTGGCTAGTAAGTTTTTAAGAGAGGTTCAAATAACGGAAGCTAAAAAATTTTA 150526 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 | |||||||| || |||||||||||||||| |||| || ||| | | || |||| Sbjct 150525 TTCCTTTCAAATAGCTGTAGAAAATATTCATTCAGAAACATATAGTTTATTAATTGATAA 150466 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTAATGCGATAGAAACAGTACCTG 44066 || || ||||||| | || ||| | | || ||| |||| ||||||| | |||| Sbjct 150465 TTATATTAAAGATGAAAAAGA-AAGATTAAATTTATTTCATGCTATAGAAAATATCCCTG 150407 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 | | ||| |||||||| ||||| |||||||| ||| | | |||| |||| | Sbjct 150406 CCGTAAAAAATAAAGCATTATGGGCAGCAAAATGGATTAATGATACTAATTCGTTTGCTG 150347 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCGTTTGCG-GC 44184 || || |||| || |||| ||| ||||| || | | ||||| | | |||| | || Sbjct 150346 AAAGAATTGTTGCTAATGCATGTGTTGAAGGAATAT--TATTCAGTGGTAGTTTTTGTGC 150289 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || |||||||| ||||||| | | | | || ||||| ||| ||||| ||||| Sbjct 150288 AATTTTTTGGTTTAAGAAACAAAATAAATTACACGGTTTGACATTTAGTAATGAATTAAT 150229 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA-TCTAGGAG 44303 ||| | |||||||| |||||| |||||| |||| ||| || ||| | || || Sbjct 150228 CAGTAGAGATGAAGGATTACATACAGATTTTAATTGC---TTAATT-TATAGTTTATTAG 150173 Query 44304 ACGATAAGCCTTCATGTAAGACAAT--TAC-AGATATTGTTGTAGAGGCAGTAAAGATAG 44360 | |||| | | || || | ||| ||| | |||| ||| ||| || ||| | | | Sbjct 150172 ATAATAAACTTCCA--GAACA-AATGGTACAAAATATCGTTAAAGAAGCTGTAGAAGTTG 150116 Query 44361 AACAAGAATTTATGACAACAGCATTACC-TGTAAATTTAATAGGAATGAA---TGAACTT 44416 || | ||||| | | ||||| ||| |||||||||||||||| | |||| Sbjct 150115 AAAGATCTTTTATATGTGAATCCTTACCATGT-GATTTAATAGGAATGAATTCTAGACTT 150057 Query 44417 TTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGC 44473 ||| |||||||| |||| |||| ||| | ||| || ||| | || ||| Sbjct 150056 ---ATGTCTCAATATATAGAATTTGTTGCTGATAGATTA---TTAGAATGTTTAGGATGC 150003 Query 44474 GATAAACACTAT--ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 |||| | | | ||| | |||| || ||| ||| ||||| ||||| | ||| Sbjct 150002 TCTAAA-ATTTTCCATTCCA-AAAATCCATTTAATTGGATGGACTTAATTTCACTTCAAG 149945 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | ||||||||||||||||| ||| | || | ||| ||||| Sbjct 149944 GAAAAACAAACTTTTTTGAGAAAAGAGTCGCAGATTATCA 149905 >seq9 Length=827030 Score = 185 bits (204), Expect = 7e-42 Identities = 336/489 (69%), Gaps = 6/489 (1%) Strand=Plus/Plus Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||| | || ||| ||||||| ||||| | | ||||||| || || ||||| | |||| Sbjct 500618 GATTTAGGACCTATTTATGGTTTTCAATGGAGACATTTCGGTGCTGAATATACAAATATG 500677 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAA 40988 || | ||||| ||||||||| ||||||||||| | | ||| || |||||| Sbjct 500678 TATGATAATTATGAAAATAAAGGAGTGGATCAATTAAAAAATATAATAAATTTAATTAAA 500737 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 ||||| || || | || | ||||| || ||||| || || | | Sbjct 500738 AATGATCCTACAAGTAGAAGAATTCTTTTGTGTGCATGGAATGTAAAAGATCTTGACCAA 500797 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||||| || ||||||||| | |||||||||||||| |||| | |||| || | ||| Sbjct 500798 ATGGCATTACCTCCTTGTCATATTTTATGTCAGTTTTATGTTTTCGATGGGAAATTATCA 500857 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||| |||||||||||||| |||| | || ||||| || || ||||| || || | Sbjct 500858 TGTATTATGTATCAAAGATCATGTGATTTAGGGCTAGGAGTACCTTTTAATATTGCTTCT 500917 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 ||| || | | || ||||||||||||| || ||||| |||||| | || | Sbjct 500918 TATTCTATTTTTACTCATATGATTGCACAAGTCTGTAATTTGCAACCTGCGCAGTTCATA 500977 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 ||| |||||| ||| |||| |||| | ||||||||| || |||| | ||||| Sbjct 500978 CACGTTTTAGGAAATGCACATGTTTATAATAATCACATTGATAGTTTAAAAATTCAACTT 501037 Query 41289 ACACGAAAACCTAGACCATTTCCAACGCTACTT--ATTAAA-CGCGCTGTTGAAAACATT 41345 | ||| ||| ||||| ||||| |||| |||||| | | | || |||| ||| Sbjct 501038 AACAGAATACCCTATCCATTCCCAAC---ACTTAAATTAAATCCAGATATTAAAAATATT 501094 Query 41346 GATGATTTT 41354 || |||||| Sbjct 501095 GAAGATTTT 501103 >seq8 Length=883952 Score = 116 bits (128), Expect = 3e-21 Identities = 327/501 (65%), Gaps = 17/501 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || ||||| | |||||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct 87183 CCGAAAATAATTAATGGTCCAGAAATATTAAATAAATATGTTGGACAATCAGAAGAAAAT 87124 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTC 19547 | || ||| ||| || || ||| ||| | |||| || | | | | | ||| Sbjct 87123 ATTCGTAATTTATTTAAAGAAGCAGAAATGGAATATAAAC----AGAGTGGAGAGAATTC 87068 Query 19548 ---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG--------- 19595 || || || |||||| |||||||| | || || || |||| ||||| Sbjct 87067 ATTATTACATATAATAATATTAGATGAAATTGATGCTATATGTAGACAAAGAGGAAATGT 87008 Query 19596 AGGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGA 19655 |||||| || | ||| ||| |||| | ||| || |||||| | | || ||| | || Sbjct 87007 AGGTTCAAGTAGTACTGGGGTAAATGATAGTGTCGTAAATCAATTATTATCTAAAATCGA 86948 Query 19656 CGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAAT 19715 || || || | |||||||| || | ||||| ||||| |||||| | || ||||| Sbjct 86947 TGGAGTAAATAGTTTAAATAATATACTATTAATTGGAATGACAAATAGAATAGATTTAAT 86888 Query 19716 AGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGA 19775 ||| || || | || || || | || || || | || ||||| |||||| | Sbjct 86887 AGATGAAGCTTTGCTTCGTCCTGGAAGATTTGAGTTACATATAGAAATATCCTTACCAAA 86828 Query 19776 TGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCT 19835 | || || | | |||| ||||| || |||||| || ||| || | ||| Sbjct 86827 TAAAGAAGGCAGAATACAAATATTAAATATTCATACAAAAAATATGAGAATGAGTAATAA 86768 Query 19836 TTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGC 19895 |||| | ||||||| || || |||| | || | || |||| | || || Sbjct 86767 ATTAAGTTCCGATGTAAATATATTAGAATTAGCCGAAAGAACTCCTAACTTTTCTGGAGC 86708 Query 19896 AGAACTTGAGGGATTAGTGAG 19916 |||| |||| || ||||| || Sbjct 86707 AGAAATTGAAGGTTTAGTAAG 86687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452236215885