Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 >seq6 Length=3179732 Score = 122 bits (134), Expect = 7e-23 Identities = 790/1249 (63%), Gaps = 46/1249 (4%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 |||||||| ||| ||||||||||||||||| || | || | || | || || ||| Sbjct 1469621 TGATCAATGAAAATACCCCTGTCTGCAGCCATATCAATAATATTCTTTTGCTTAATTTCC 1469680 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 || | || ||||| | || | | || | ||||| || |||||| || Sbjct 1469681 CATACAGTTTTGTACAACTCTTTTAAGTCATCTGGTATTTCACTTATATATTGAATACTT 1469740 Query 130676 CCGTTGTTGGCTAT-AATTTC-GTTGCGCATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || |||| ||||| |||| | ||| | || || ||| | || || |||| || Sbjct 1469741 CCATTGTGAGCTATTAATTGCTGTTTC--ATGTCTTCATCCCATAAACCT--CTGTCAAA 1469796 Query 130734 GA--TCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 | ||||||| |||||| ||||| | ||| || ||| | || | |||| Sbjct 1469797 TAAATCTTTTAACAAATGGGGATTAACAACAAAAAATTCTCCACTTAAAACTCTTCTATA 1469856 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 ||||| || || || | |||||||||||||| ||||| || | ||||||| |||| Sbjct 1469857 ATAAATATTACTAGTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGA 1469916 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 ||| || ||||| ||| | ||||| || || | | ||| || | |||||| Sbjct 1469917 TGCAGTTGGCATAGGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGC 1469976 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGT----AGGTTTGACATTGTTCCACATATCAA 130967 || ||||||||||||||||| | | || | ||| || ||||||||||||| Sbjct 1469977 TTTTAATTCATCCCAATCCCA-ATATTTGTTATCAACTTTAGCA---TTCCACATATCAA 1470032 Query 130968 ATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACAC 131027 |||||| ||| |||| || || ||||| || | ||||| || ||| | | Sbjct 1470033 ATTGTAATATACCTTGGCTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTG 1470092 Query 131028 GAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTAT 131087 ||||| || ||| ||||| | ||||| || ||||| ||| ||||| Sbjct 1470093 AAGCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTAT 1470152 Query 131088 TTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGA 131147 | |||| ||| || | || || ||| || | | ||| ||||| | ||||| | Sbjct 1470153 TCAATTCTTTTGCAGCATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTA 1470212 Query 131148 GACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGG 131207 || || | |||| || | || |||||| | |||| || | | || | Sbjct 1470213 ATCCTTGAACACCAATACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGA 1470272 Query 131208 TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGC 131267 |||||| || | || || ||||| | |||||| | | ||||| || | Sbjct 1470273 CTGGATAATAATTTCTTTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAA--- 1470329 Query 131268 TTTTC----AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACA 131323 |||| || || | |||| || |||| | | |||||||| | || | Sbjct 1470330 -TTTCATATAACTTTTTAAAATTGAATTCTTTTTTTTCCAAATCTACAAATTTACATAAA 1470388 Query 131324 CATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCG 131383 ||| || |||| |||||| || || ||| ||| | | ||| | | |||||| Sbjct 1470389 GCTATAGATGCCAAATTACATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCA 1470448 Query 131384 GCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACA 131443 || || ||||| | || || || |||||||||| |||||| ||| ||||| ||| Sbjct 1470449 CAACATAAGTTACTACATTTAATAGTACCCAAATTTTTCTGATTGGATTTTGCATT-ACA 1470507 Query 131444 TG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCG 131502 | || || || | ||| || || || ||||| | ||| ||| |||| || | Sbjct 1470508 AGAATCTTTATATAGCATATATGGTACTCCTGTTTCTATTTGGCTTT--GTAATATAGCA 1470565 Query 131503 AA--AGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTT-TTCGTAAT-TTT 131558 || | | | | ||||| | || || ||| | || | ||| ||| | || ||| Sbjct 1470566 AACCATAAATCTTGAGCA-AGAACTG---TTTTTTTTCCCATATTTTCTTCTTCATATTT 1470621 Query 131559 CG--TACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC---CAAATTGGGACATTCGCT 131613 | || || ||||||| | || || | || | || ||| |||||||| | Sbjct 1470622 AGTATATAATTTTTCAAATTCTT---CACCCCAAGTTTCACTTAAACCTGGACATTCATT 1470678 Query 131614 GGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCAC 131673 |||||||||| | ||| || | || ||||| ||||||||| | ||| || || Sbjct 1470679 TGGACACATTAATGTCCAATTTTTATTTTCTTTAACTCTCTTCATAAAAAGATCAGGAAC 1470738 Query 131674 CCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt-tttttCA 131732 ||||| || || || | ||||| ||| || |||||| | |||| || ||| | | Sbjct 1470739 CCATACAGCATAAAATAAATCTCGTGCTCTTAATTCTTCT-TTTCCATGGTTCTTTCTTA 1470797 Query 131733 AATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 ||| |||||| || || || || | |||||| ||||| | ||| || || Sbjct 1470798 AATCTAAAAATTCAAATATATCTGAATGCCATGGTTCAATATAAACAGC 1470846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930376004024