Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 100 4e-16 >seq6 Length=3179732 Score = 100 bits (110), Expect = 4e-16 Identities = 401/626 (64%), Gaps = 9/626 (1%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 || |||||||||||| ||||||| || || | ||||||| || || || |||||||| Sbjct 1469870 GTATATGGTTCAAAGGATTCATTGTTTCCTAGAATTTGTGAAGTAGATGCAGTTGGCATA 1469929 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | || | ||| | | ||| | | ||| | || | ||||| Sbjct 1469930 GGTGCTAATAATAATGAGTTTCTTAAACCATGTTTACGGATTTTAGCTTTTAATTCATCC 1469989 Query 110840 CAGTCG---TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 || || || ||| | || | | | |||||| ||||| || | | |||||| Sbjct 1469990 CAATCCCAATATTTGTTATCAACTTTAGCATTCCACATATCAAATTGTAATATACCTTGG 1470049 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CAGCT 110955 || ||| || | | | | |||||| | || || | |||||||||| ||| Sbjct 1470050 CTTGCTGGACTTCCTTGATAAGATTCATATGGTCCATGTATTGAAGCCAATTCAACAGA- 1470108 Query 110956 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 111015 | || | | || | |||||| |||||||| || | ||||| || || || | Sbjct 1470109 CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTTTATTCAATTCTTTTGCAGC 1470168 Query 111016 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 111075 ||| || ||| ||| || | | || |||||| ||| || | ||||||||||| | Sbjct 1470169 ATCAGATTCATATGGATATCTTAATAACATAAATGTATCTGCTAATCCTTGAACACCAAT 1470228 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 ||||||||| || |||| ||||||| || || | || |||||| ||||||| Sbjct 1470229 ACCAATAGGCCTATGTCTAGTATTAGATGTTTTTGCTTCTTTGACTGGATAATAATTTCT 1470288 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 || || | | | || |||| | |||| ||| || || ||||||| | |||| | | Sbjct 1470289 TTCTATAATTTTATCTAAATTTCTTGTAATAATTTTGGTAATTTCATATAACTTTTTAAA 1470348 Query 111196 ATCAAAAGTGCGAGTCTCTTC--ATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 || || | | | | | | || ||| | || | || || ||||||||||| Sbjct 1470349 ATTGAA--TTCTTTTTTTTCCAAATCTACAAATTTACATAAAGCTATAGATGCCAAATTA 1470406 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || ||||| ||||| | || || || | |||||| ||||||||| || Sbjct 1470407 CATACAGCAACTTCATCAGGAGAGGTATATTCGATAATTTCACAACATAAGTTACTACAT 1470466 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTT 111339 ||||| || |||||||| || || || Sbjct 1470467 TTAATAGTACCCAAATTTTTCTGATT 1470492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025900239200