Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 >seq9 Length=827030 Score = 114 bits (126), Expect = 1e-20 Identities = 422/648 (65%), Gaps = 26/648 (4%) Strand=Plus/Minus Query 111657 TTTAATTTTTAGTTTTGGAAAGGGGGTAGGCT-TTCGGGTAAGCTGTAATTGTAAAGGCT 111715 |||||||| ||| |||| || || |||| | ||| | |||| || | || |||| | Sbjct 501075 TTTAATTTA-AGTGTTGGGAATGGA-TAGGGTATTCTGTTAAGTTGAATTTTTAAACTAT 501018 Query 111716 GTATGTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCA 111775 |||||||| ||||||||| |||| ||||| | || || || | | ||| | || Sbjct 501017 CAATGTGATTATTATAAACATGTGCATTTCCTAAAACGTGTATGAACTGCGCAGGTTGCA 500958 Query 111776 AACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCA 111835 || | || ||||||||||| | || | | | ||| |||||| ||||| || | Sbjct 500957 AATTACAGACTTGTGCAATCATATGAGTAAAAATAGAATAAGAAGCAATATTAAAAGGTA 500898 Query 111836 CACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACA 111895 | ||||| || | ||| | ||||||||||| | |||||||| ||| | | | Sbjct 500897 CTCCTAGCCCTAAATCACATGATCTTTGATACATAATACATGATAATTTCCCATCGAAAA 500838 Query 111896 CATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAG----GGT 111951 ||||||| ||||| | | |||||||||||| |||||||| || | ||| | Sbjct 500837 CATAAAACTGACATAAAATATGACAAGGAGGTAATGCCAT----TTGGTCAAGATCTTTT 500782 Query 111952 CC---CCATGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTAT 112007 | ||||||||||| | || ||||| | ||||| ||| || || ||| | ||| Sbjct 500781 ACATTCCATGCACACAAAAGAATTCTTCTACTTGTAG-GATCATTTTTAATTAAATTTAT 500723 Query 112008 GACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATCCAGTGTATGT 112067 | ||| | || || | |||||| ||||| | | |||| ||||| | Sbjct 500722 TATATTTTTTAATTGATCCACTCCTTTATTTTCATAATTATCAT-ACAT-ATTTGTATAT 500665 Query 112068 T--GCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTA 112125 | || || | ||||||||||| || ||||||||||| || | ||| || || Sbjct 500664 TCAGCACCGAAATGTCTCCATTGAAAACCATAAATAGGTCCTAAATCGTTAACTTCTCTA 500605 Query 112126 TCTGGAAATTGCTCTCTATT---CAACAAATCACTTCTAATATGAGGATTCCAAATCTTC 112182 | ||||| | |||||| || || || || || || || | ||| ||| | Sbjct 500604 T---GAAATAATTTTCTATTATCTAAAAATTCCCTAGTACCATTAGCTTCCCATATCCTT 500548 Query 112183 ACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCT 112242 || ||| | | ||| | ||||||| ||||||||||||||| ||||||||| Sbjct 500547 ACATTCTTATTTAACAACGTATTACCATTTGTTTCTCCTCTAATAAACCAAAGCAATTCT 500488 Query 112243 TCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAAA 112290 || | || ||| | | | | | | || ||||||| | ||| ||| Sbjct 500487 TCAATAATTCCTCTTAAAAATAATTTCTTTGTAGTTAATAATGGGAAA 500440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391941888397651