Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 seq4 100 3e-16 >seq5 Length=2641308 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || || || || ||||| ||||| |||||| || Sbjct 2485692 AATGCAAATTTTTGTAAAAACATTAACTGGAAAAACCATTACCCTTGATGTTGAGCCATC 2485633 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| | ||||| |||||||| || || || ||||||||||| || || Sbjct 2485632 TGATACGATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCA 2485573 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| |||||||| || ||| | || |||| | ||| || |||| ||||| Sbjct 2485572 ACAAAGATTAATATTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTATCAGATTATAA 2485513 Query 27585 TGTCCAAAAGGAATCCACT 27603 | | ||||||||||| ||| Sbjct 2485512 TATTCAAAAGGAATCTACT 2485494 >seq4 Length=1968205 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || ||||| || ||||| || ||| || ||| | ||||| ||| | ||||| ||| Sbjct 458631 GGAAAAACTATAACCCTTGACGTCGAGCCATCTGACACCATTGAGAATGTTAAGGCAAAA 458690 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || || || |||||||| || ||||| || | |||| ||||| || || ||| Sbjct 458691 ATTCAAGATAAAGAAGGAATTCCACCTGACCAACAAAGATTAATATTTGCAGGAAAACAA 458750 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 | || |||| | || || |||| ||||| | ||||||||||| || Sbjct 458751 TTAGAAGATGGAAGAACTTTATCAGATTATAACATTCAAAAGGAATCTAC 458800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304860860240