Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 102 5e-17 seq4 93.3 3e-14 >seq5 Length=2641308 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || | ||| ||||||||||| ||||||||||| | || | | ||||| Sbjct 2485483 ACCAAGTGTAAAGTAGATTCCTTTTGAATATTATAATCTGATAAGGTCCTTCCATCTTCT 2485542 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || ||||||||||| | ||||| || || || | ||| || || ||| || Sbjct 2485543 AATTGTTTTCCAGCAAATATTAATCTTTGTTGATCAGGAGGAATTCCTTCTTTATCT-TG 2485601 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||||| | ||| || || ||| || || | ||| || ||||| Sbjct 2485602 AATTTTTGCCTTAACATTCTCAATCGTATCAGATGGCTCAACATCAAGGGTAATGGTTTT 2485661 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| ||||| |||||||| ||||| || Sbjct 2485662 TCCAGTTAATGTTTTTACAAAAATTTGCATTTT 2485694 >seq4 Length=1968205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||||||||||||||| | |||| | ||||| | |||||| || |||||| Sbjct 458794 TCCTTTTGAATGTTATAATCTGATAAAGTTCTTCCATCTTCTAATTGTTTTCCTGCAAAT 458735 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 ||||| | |||||||| || || | ||| || || ||| ||| ||||| ||||| | Sbjct 458734 ATTAATCTTTGTTGGTCAGGTGGAATTCCTTCTTTATCT-TGAATTTTTGCCTTAACATT 458676 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACC 34679 ||| ||||| ||| || || | |||||| ||||| || Sbjct 458675 CTCAATGGTGTCAGATGGCTCGACGTCAAGGGTTATAGTTTTTCC 458631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726619609041